Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4533g00012 ATGTCTGGCAACTCAAATTGCACTGTTTATGTAGGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATTTTAATTCAAGCAGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGAGAAACCAAAAGGTTATGCCTTTGTGGAATATGAAACCGAGGAGATTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTAACGCTGTACAACAGAACACTGAAGTTTGCGATATCTGGGAAAGACAAAACTACCCCTAATGGTTCTGCAACAATTACACCCACATCCAATTCTTCTCAACGACCAAGGCCTTACCCAGTGCCAATAATTAATTCAGAAAATTTTCAACACTCCGCTAGGATATCAACACCTGATCGATTTTCAGATTATGCAGTAAATTATTCCCAAGTTTCTCCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTACAGTGGCAACAATTATGAATACAGTCGGAGAGCTTTTGGGGCATCATTGGATAGCATCAGCCGATCTAGGTCACGCCGCTAA 552 0.4239 MSGNSNCTVYVGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGYAFVEYETEEIADYAVRLFSGLVTLYNRTLKFAISGKDKTTPNGSATITPTSNSSQRPRPYPVPIINSENFQHSARISTPDRFSDYAVNYSQVSPRVTDQSSGYGSHYSGNNYEYSRRAFGASLDSISRSRSRR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4533g00012 183 SUPERFAMILY RNA-binding domain, RBD 4 84 IPR035979 GO:0003676
Gabi4533g00012 183 SMART rrm1_1 8 82 IPR000504 GO:0003723
Gabi4533g00012 183 CDD RRM1_SF3B4 9 83 IPR034158 -
Gabi4533g00012 183 Gene3D - 2 96 IPR012677 -
Gabi4533g00012 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Gabi4533g00012 183 MobiDBLite consensus disorder prediction 89 112 - -
Gabi4533g00012 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Gabi4533g00012 183 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4533g00012 Gabi-Chr4533 77304 81104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4533g00012 8 87 Eukaryotic Initiation Factors Gene Family AT1G49760 32.500 1.14e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4533g00012 K12831 - gmx:100784532 310.457