Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4533g00010 ATGGAAGATTCAGAGGAAGATGAGCTTCTAAATCTTAGCCTTTCAGTTGCTGCTGATAGGGAAAGGAAAAAGAAGGGAAAGATAAGGGAAAATGATGTTTCTATGAGTACTATGAACTCGTATGAAGGCTGTGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAACAGATGCTAAGACAAGAACATAGAAGAAAAGGAGTTGTAGAAGATGGGAATGGCCTTCCTTTGATCCATTTGCTTCTCACAACTGCAACTGCTGTTGATGAGAACAACTTGGATTCAGCTTTGGAGAATCTGACTGATTTATATCAAACTGTTTCCCTAACAGGTGATTCTGTTCAACGTGTGGTGGCTTATTTTGCAGATGGTTTGGCTGCAAGGCTTCTCACAAGGAAATCCCCATTCTATGACATGCTTATGGAGGAACCAACAAATGAGGAAGAGTTTCTGGCATTCACAGATCTTTACAGAGTCTCACCTTATTACCAATTTGCTCATTTCACTGCAAATCAGGCTATCTTGGAGGGATTTGAGAAGGAGGAAGAGAGGAACAACCGTGCTTTACATGTCATTGACTTTGATGTCTCCTATGGTTTCCAATGGCCTTGTCTTATTCAATCACTTTCTGAGAAGGCAACAAGTGGCAACCGCATATCCCTCAGGATAACTGGTTTTGGGAAAAACCTTAAAGAACTTCAAGAAACTGAGTCTAGATTGGTTAGCTTCTCAAAGGGTTTTGGAAATCTTGTGTTTGAATTCCAAGGGCTTCTAAGAGGCTCAAGGGTCATCAACCTTAGGAAGAAAAAGAATGAAACTGTGGCTGTTAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCTCTTAACCCCTCCATTGTTGTCTTGGTGGAGCAAGAAGGTAGTAGGAGTCCTAGAACCTTCTTGTCAAGATTCACAGACTCTTTATACTATTTTGCAGCCATGTTTGATTCACTTGATGATTGTCTCCCACTCGAGAGCACTGAGAGGTTGAGAATTGAAAAGAAACTTCTTGGTAAAGAGATCAAAAGCATGCTTAACTATGATGTGGATGGCATGGATTGTCCAAAATATGAGAGAATGGAAACATGGAAAGCAAGAATGGAGAATCATGGATTTGCTGGCACCAAAATAAGCTCAAAGTCTATAATCCAAGCAAAACTGCTTCTGAAAATGAGGACCCATTATTGTCCACTTCAGTTTGAGGAGGAAGGAGGTGGTGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAAGGCTATATCTTTAGGGTGGCAAAATAGGTTTCTGCTTACAGTCTCAGCATGGCAACCAGTTTCTTAG 1377 0.4067 MEDSEEDELLNLSLSVAADRERKKKGKIRENDVSMSTMNSYEGCEGKIFRLLQMREQMLRQEHRRKGVVEDGNGLPLIHLLLTTATAVDENNLDSALENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTNEEEFLAFTDLYRVSPYYQFAHFTANQAILEGFEKEEERNNRALHVIDFDVSYGFQWPCLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRTFLSRFTDSLYYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDVDGMDCPKYERMETWKARMENHGFAGTKISSKSIIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGKAISLGWQNRFLLTVSAWQPVS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4533g00010 458 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 64 450 IPR005202 -
Gabi4533g00010 458 Pfam GRAS domain family 77 455 IPR005202 -
Gabi4533g00010 458 ProSiteProfiles GRAS family profile. 68 455 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4533g00010 Gabi-Chr4533 56690 58066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4533g00010 85 458 GRAS Transcription Factor Family AT3G54220 34.987 1.24e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi4533g00010 GRAS 3.4e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4533g00010 - - gmx:100809458 812.372