Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4533g00008 ATGGATCGAAAAGGAAGCTTATGTAACAACTGGGCAAGGTCCTCTTCCTTAACCTCTCCTGGGAATGGATTACAGACGAATTTGTCCTCAGATCCTCCGTCTTTCTATGGGGTGAGGATTGAAGCACCTTTCAAAGAATTCAACCAACCCTCTCCAACCCAGTCTTTGCTTCGCGGTGAATCTAACAAAGATATTAAGATCCCTGATCAAGAAAATGTTCCATTGAATGACTCATCACAAGCCAATAAAATCGAAGATTGGGATCCCAATATGATGTTGAATAACCTTTCCTTCCTCGAAGAAAAGATTCATCAGCTCCAGGAACTAGTGCATTTGATTGTTAATAAAAAGTGCCAACCTTTTGGACAACCTCATGAGCTCGTGACTCGGGAACAGCAGCTCATCACAGCTGATCTTACATCAATTATTATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGACACACCCTTTCAAACGCGAATCCATTGGCTGGACAGCTTGGCCAGCTTCGCGGGATGAATCTTCCTTTTGGATCAGGCTCGAGTAGTGGTATTCGGCCACAAAATAATAGTGGAAACAAATTGTTTGATCAGTCCACACATAATGATCAGCCTAATAATTGTGAAATGGAGCAAAACTACAATATGGAAGAACATGAAGCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAACCTTCCACCTGGTTCCTATGAGATTTTACAATTGGAAAAAGAAGAAATCCTTGCACCTCATACACATTTCTGTACAATATGTGGGAAGGGATTCAAGAGGGATGCAAATCTCCGGATGCACATGCGAGGCCACGGTGATGAGTACAAAACTCCGGCAGCTCTTGCAAAACCACATAAAGAAGCTGGGTCTGAACCAACACTTATCAAGAGGTATTCCTGCCCCTATTCTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTCTAAAGACTATCTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGCTACATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGATCTTAAAACTCATGAGAAACACTGTGGTAAGGATAAATGGATTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCCATTCCTTTGGATGACACTAAAGGACTGGCTGAGACGCATGATCTTGAAAAAAAAGGAACCAACAACAGTAAGGTAGGAAGTATGAACTTCTGTTTTGGATCAAATCCTTTAAGTGAAAATGGAGTTCAAAATATCAATGATGTGAAAGGTAATATTGATGATCCTATCAATTATTTCTCATCCTTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCCCAACCTCCCTTTGAAGACTCAGAAGGTTCTTTCTCTTTTCTTATGTCTGGATCGTTTAATCATGCTTCTAAATGTGGAGGTGAATCAAGTTCTGACAATCTGTAG 1533 0.409 MDRKGSLCNNWARSSSLTSPGNGLQTNLSSDPPSFYGVRIEAPFKEFNQPSPTQSLLRGESNKDIKIPDQENVPLNDSSQANKIEDWDPNMMLNNLSFLEEKIHQLQELVHLIVNKKCQPFGQPHELVTREQQLITADLTSIIIQLISTAGSLLPSVRHTLSNANPLAGQLGQLRGMNLPFGSGSSSGIRPQNNSGNKLFDQSTHNDQPNNCEMEQNYNMEEHEAKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEAGSEPTLIKRYSCPYSGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWICSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGLAETHDLEKKGTNNSKVGSMNFCFGSNPLSENGVQNINDVKGNIDDPINYFSSLNFEGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNHASKCGGESSSDNL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4533g00008 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Gabi4533g00008 510 Gene3D Classic Zinc Finger 242 311 - -
Gabi4533g00008 510 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4533g00008 510 MobiDBLite consensus disorder prediction 180 210 - -
Gabi4533g00008 510 MobiDBLite consensus disorder prediction 8 31 - -
Gabi4533g00008 510 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Gabi4533g00008 510 SMART c2h2final6 345 367 IPR013087 -
Gabi4533g00008 510 SMART c2h2final6 258 280 IPR013087 -
Gabi4533g00008 510 SMART c2h2final6 307 340 IPR013087 -
Gabi4533g00008 510 SUPERFAMILY beta-beta-alpha zinc fingers 256 283 IPR036236 -
Gabi4533g00008 510 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 71 482 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4533g00008 Gabi-Chr4533 42066 44783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4533g00008 226 508 C2H2 Transcription Factor Family AT1G34370 69.097 1.42e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4533g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4533g00008 - - gmx:100170687 887.1