Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4533g00001 ATGGGGGATTCATATTTCACCAATGATCACCTATTTAGAACTTCCTCTGAACAAACAGAGGACCGTGCTTGTCTCTCTGCTATGCTTCTCAGTACTAATCTTGTGTATCCTGCAGTCCTCAATGCTGCTATTGAACTCAACTTGTTTGATATCATAGCTAAAGCAACCCCACCTGGTTCATTCATATCACCCTCTGAAATTGCTTCTAAGCTCCCAACCCAACATTCTGACTTGCCTAATAGACTTGACCGCATGCTTCGTTTGCTTTCCAGTTACTCTCTTCTTACTTGTTCCACTCGCACCACTCCTCATGGTTCCTCTGAGAGAGTTTATGCTCTCTCACAAGTTGGAAAATACTTTGCCTCTGATGAAAGTAGGGGCTACTTGGCTTCATTCACCACATTTGTCTGTTATCCATCACTGTTACAAGTTTGGCTGAACTTCAAGGAAGCAGTGGTTGATGAAGACATTGACCTGTTCAAGAAAATTCATGGAATAACAAAGTACGAGTACATGGAAAAGGATCCTAAAATGAACCACATTTTTAACAAGTCAATGGCAGATGTGTGTGCAACAGAGATGAAAAGAATGCTTGAAATATATAATGGGTTTGAGGGAATATCAACATTGGTTGACGTTGGAGGTGGAACTGGACAAAATCTCAAAATGATAATCTCCAAGTACCCTTTAATAAAGGGAATCAATTTTGATCTGCCCCAAGTGATTGAAAATGCACCATTGCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGAGTTCCACAGGGTGACGCCATAATGCTAAAGGCTGTATGCCACAATTGGTCAGATGAAAAATGCATAGAACTTTTAAGTAATTGTCATAAAGCATTGCCACCAAACGGGAAGGTGATTGTTGTGGAGTTCATATTGCCAGAAGAACCAGAACCAACTGAAGAATCCAAGCTTGTTTCCACTCTCGACAACCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTGAGAAACAATATGAGAATTTGGGCAAGCTTTCTGGATTTTCAAAATTTCATGTTGCTTGTCGCGCTTTCTCGAGTTTGGGAGTGATGGAATTTTATAATTAA 1110 0.4054 MGDSYFTNDHLFRTSSEQTEDRACLSAMLLSTNLVYPAVLNAAIELNLFDIIAKATPPGSFISPSEIASKLPTQHSDLPNRLDRMLRLLSSYSLLTCSTRTTPHGSSERVYALSQVGKYFASDESRGYLASFTTFVCYPSLLQVWLNFKEAVVDEDIDLFKKIHGITKYEYMEKDPKMNHIFNKSMADVCATEMKRMLEIYNGFEGISTLVDVGGGTGQNLKMIISKYPLIKGINFDLPQVIENAPLLPGIEHVGGDMFARVPQGDAIMLKAVCHNWSDEKCIELLSNCHKALPPNGKVIVVEFILPEEPEPTEESKLVSTLDNLMFITVGGRERTEKQYENLGKLSGFSKFHVACRAFSSLGVMEFYN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4533g00001 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 365 IPR029063 -
Gabi4533g00001 369 FunFam Caffeic acid O-methyltransferase 123 369 - -
Gabi4533g00001 369 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Gabi4533g00001 369 SUPERFAMILY "Winged helix" DNA-binding domain 20 124 IPR036390 -
Gabi4533g00001 369 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Gabi4533g00001 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 369 IPR016461 GO:0008168
Gabi4533g00001 369 PIRSF O-mtase 6 369 IPR016461 GO:0008168
Gabi4533g00001 369 CDD AdoMet_MTases 209 306 - -
Gabi4533g00001 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
Gabi4533g00001 369 FunFam Caffeic acid 3-O-methyltransferase 7 120 - -
Gabi4533g00001 369 Gene3D - 6 120 IPR036388 -
Gabi4533g00001 369 PANTHER O-METHYLTRANSFERASE 27 352 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4533g00001 Gabi-Chr4533 7120 8608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4533g00001 14 359 Monolignol Biosynthesis Gene Families AT5G54160 49.280 5.46e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4533g00001 - - gmx:100787536 615.92