LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4532g00004	ATGGAGGAGACACGAGAAGATGCAGGGCCGGCAGAGCAAGGTCAATCTAATGTATCGTGGTGGCCTTCTGATTTTGTTGAAAAATTTGGATCTGTTTCTTTGGGTTCTCAAGATGAGACCTTGAATAATGAAGAATCTCCTAGACATTCTCACAATGATGTTTTGTCACCTCAGAAAGCATCACAAATTCTCTGGCGCACTGGAATGCTTTCTGAACCAATACCAAATGGATTTTATTCAGTCATTCCGGAGACCAGACTTAAGGAACTTTTTGATAGCATTCCTACCTTGGACGAGCTTCATGCTTTGGGTGGAGAGGGTTTTAGGGCTGACATCATTCTTGTGGATTCAGAGAAAGATAAAAAGCTATCCATGTTGAAGCAACTGATTGTGGCATTGGTTAAAGGATTAAACTCAAATCCAGCGGCGATAATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGATCCAATGTGGAAAGTCCAGCAAAAGTTGCATTAGATGAAACGTCTCACATCTTTGAGAATCGAGGTGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGCCGTCCTCGTGCTATCTTATTTAAAGTATTAGCTGATACTGTAGGTCTTGAAAGTATGCTCATGGTGGGCTTGCCAAATGATGTGGCTGTTGAATGTGTCGATTCATACAAGCATATGTCTGTGATAGTTGTATTAAATTCTGTGGAAATGCTGGTTGATCTTATGCGGTTTCCGGGCCAATTGTTACCACGATCAACCAAGGCAGTTTTTATGACTCATATTTCTGCAGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCGCCATTAGAACCAAACAGTCCTTTATTTGGGGTTTCAGAAAGTGCTGAGAAGGAGGAAAACCTCCAATTCCATAGAAGATTTGAAGCATCTCCAAATGTATCGGGCCTTTCCTTGAGAAATATGATGTTACGATCACATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAACATTGCAACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACATAGGACAGCTAGTTCAAGTCCGGAACATCCATCATTTAGAGCACGTGCACGGTCCATGCTTAGTGGTGATAGAACAGCATTTAGAGATTTTGCTGATGACCAGGCTACATCAAGATCCAGTTATAGGTCAGATGGTGCATCTTCGTTAGAAGCTCGTAGGATACGAAGAAGAAGCATCAGCATTACCCCAGAGATTGGTGATGACATCGTAAGGGCTGTACGGGCAATGAATGAAACACTGAAGCAAAACCGTCTTCTGAGAGAACGAGGGGATGATAACTCATTCTCCCATTCTCCAAACAATAGAAGTAGTGATGCCAATCTTCAGAAAAATGTGTCAAATTTCGGTGTTCATGGTCATGATGAAAGGTCCGTCTTATATTCTCTTCAGCGTGACGAAGTAACTTCACAAAAGGCAATGTCATTACCGTCTTCACCGCATGATTATAGAGGTCATGCTTCTGAGAGCAGCGGGCCATCAAGATATGGAGTGAATGATGAAATGGAGTCGACTTGGAATAGAGTACTTGAATCTCAGATGTTCAATAATAAACCTCTGTTACCATTTGAAGAATGGAATATTGACTTCTCAGAATTAACTGTTGGCACTCGTGTAGGGATTGGGTTCTTTGGAGAAGTCTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTCCTAGAGCAAGATTTAACTGCTGAAAATATGGAAGATTTTTGCAATGAGATATCTATTCTCAGTCGGCTCAGACATCCTAATGTTATCTTATTTCTTGGGGCATGCACAAAGCCTCCACGTTTGTCAATGGTTACAGAATATATGGAAATGGGATCATTGTATTACTTGATACATTTGAGCGGTCAAAAGAAAAAGCTTAGTTGGCGGAGAAGACTTAGGATGTTGCGTGACATATGCAAGGGTTTGATGTGCATACACCGTATGAAGATTGTTCACCGTGATCTGAAAAGTGCAAATTGTCTAGTGAATAAGCATTGGACCGTGAAAATCTGTGATTTTGGGCTTTCAAGAATAATGACAGATTCTCCTGTGGGAGATCCTTCATCGGCTGGAACTCCAGAATGGATGGCTCCTGAACTTATACGAAATGAACCATTCACCGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAGCTCTGCACCTTAAATAGACCATGGGAAGGCGTACCGCCTGAGAGGGTAGTTTATTCCGTTGCTAACGAGGGTTCCAGATTGGAGATTCCTGAAGGACCCCTAGGCAGGCTGATTTCAGACTGTTGGGCAGAATCACATGAGCGGCCAAGTTGTGAGGAGATTCTTTCTCGTTTGGTGGATATCGAGTACTCATTGTGCTGA	2436	0.422	MEETREDAGPAEQGQSNVSWWPSDFVEKFGSVSLGSQDETLNNEESPRHSHNDVLSPQKASQILWRTGMLSEPIPNGFYSVIPETRLKELFDSIPTLDELHALGGEGFRADIILVDSEKDKKLSMLKQLIVALVKGLNSNPAAIIKKIAGLVSDFYKRSNVESPAKVALDETSHIFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESMLMVGLPNDVAVECVDSYKHMSVIVVLNSVEMLVDLMRFPGQLLPRSTKAVFMTHISAAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRRFEASPNVSGLSLRNMMLRSHSSLSLSHSEPNIATAFGRRSRRKVIAEHRTASSSPEHPSFRARARSMLSGDRTAFRDFADDQATSRSSYRSDGASSLEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRERGDDNSFSHSPNNRSSDANLQKNVSNFGVHGHDERSVLYSLQRDEVTSQKAMSLPSSPHDYRGHASESSGPSRYGVNDEMESTWNRVLESQMFNNKPLLPFEEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHLSGQKKKLSWRRRLRMLRDICKGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMTDSPVGDPSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYSVANEGSRLEIPEGPLGRLISDCWAESHERPSCEEILSRLVDIEYSLC	811

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4532g00004	811	ProSiteProfiles	Protein kinase domain profile.	555	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4532g00004	811	Pfam	Protein tyrosine and serine/threonine kinase	556	803	IPR001245	GO:0004672\|GO:0006468
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	439	471	-	-
	Gabi4532g00004	811	ProSitePatterns	Protein kinases ATP-binding region signature.	561	582	IPR017441	GO:0005524
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	492	520	-	-
	Gabi4532g00004	811	Gene3D	Phosphorylase Kinase; domain 1	548	633	-	-
	Gabi4532g00004	811	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	674	686	IPR008271	GO:0004672\|GO:0006468
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	386	405	-	-
	Gabi4532g00004	811	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	329	803	-	-
	Gabi4532g00004	811	FunFam	Serine/threonine-protein kinase isoform 1	546	633	-	-
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	452	470	-	-
	Gabi4532g00004	811	Pfam	Ethylene-responsive protein kinase Le-CTR1	58	253	-	-
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	36	57	-	-
	Gabi4532g00004	811	Gene3D	Transferase(Phosphotransferase) domain 1	634	809	-	-
	Gabi4532g00004	811	SUPERFAMILY	Protein kinase-like (PK-like)	530	803	IPR011009	-
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	1	22	-	-
	Gabi4532g00004	811	SMART	serkin_6	555	804	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4532g00004	811	MobiDBLite	consensus disorder prediction	388	402	-	-
	Gabi4532g00004	811	CDD	STKc_MAP3K-like	561	803	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4532g00004	Gabi-Chr4532	47507	76669	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4532g00004	1	811	MAP Kinase Kinase Kinase	AT3G58640	71.620	0.0	1197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Gabi4532g00004		PK_Tyr_Ser-Thr	2.2e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4532g00004	-		-	gmx:100803469	1459.89