Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4531g00001 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGGAAATGCAAGTATATCGACCAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCAAAGGAAAAGAAGAACTAATCTGGTTATTATATATTTAACAAAACAAGAGTTAAAGGATACTGATGCAGGTGTCATAGGCATTAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCATAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATACGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAATCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1521 0.3945 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMREMQVYRPKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKQRKRRTNLVIIYLTKQELKDTDAGVIGIKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASHRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINTETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4531g00001 506 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi4531g00001 506 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi4531g00001 506 Coils Coil 406 433 - -
Gabi4531g00001 506 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi4531g00001 506 Pfam Paired amphipathic helix repeat 225 270 IPR003822 GO:0006355
Gabi4531g00001 506 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi4531g00001 506 SUPERFAMILY PAH2 domain 204 271 IPR036600 GO:0006355
Gabi4531g00001 506 Gene3D Paired amphipathic helix 201 274 IPR036600 GO:0006355
Gabi4531g00001 506 Pfam Sin3 family co-repressor 335 427 IPR013194 -
Gabi4531g00001 506 MobiDBLite consensus disorder prediction 83 149 - -
Gabi4531g00001 506 MobiDBLite consensus disorder prediction 291 316 - -
Gabi4531g00001 506 MobiDBLite consensus disorder prediction 118 147 - -
Gabi4531g00001 506 MobiDBLite consensus disorder prediction 89 104 - -
Gabi4531g00001 506 FunFam Paired amphipathic helix protein SIN3 200 275 - -
Gabi4531g00001 506 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi4531g00001 506 SMART hdac_interact2seq4b 333 433 IPR013194 -
Gabi4531g00001 506 ProSiteProfiles PAH domain profile. 203 273 IPR003822 GO:0006355
Gabi4531g00001 506 PANTHER SIN3B-RELATED 9 506 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4531g00001 Gabi-Chr4531 4721 6496 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4531g00001 Sin3_corepress 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4531g00001 K11644 - gmx:100807181 751.895