Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi452g00004 ATGTCGGGCACGCGAGCTTCCCCCGCCGCCGCCGCCGCGTCGGCTAACCCGCCGGAGCAGATCATGCAGTCGATGAAACGGCAACTCCCGTTCTCGTCCATGAAACCGCCCTTCGTAGCTGCCGGAGATTATCATCGCTTCGCCACCGACCACCGCCGAAATGTTGACCAAGAGGCCGAAGCAATCGTCGTTAAGACTCCCCAATTGAAGCGGAAGAGTGAAACAGTTGATTTTGAAGCTGATTCTGGTGATAGGATGATTCCTGGATCCACTGAAGCAGCTAATAGTCCTTTCCAGACACCTGTATCAGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGCTGACAAAATGTAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAACCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATCTGAATAAAGCTGCTGACACACTAGAGGTGCAAAAGAGGAGGATATACGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTAAAGAACAGAATTCAATGGAAGGGACTGGATGTTTCCAGGCCAGGGGAGGCTGATGATAGTTTTGCTAACTTACAGGCAGAAGTTGAAAATCTTACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAAACTACGGAATCTTAGTGAAGACGAAAACAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCTTGCTTCCAGAATGAAACCTTAATAGCAATTAAAGCTCCACATGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAGGAGATTAATGGTGTTGATGTTGCACCCAAATTTCCACCCAGTCCAGAACTTAACAAGCATCAATCAGCAGTAGCCCCAGAGGATACAGGAAAGGACATAGAGGTGCACGGACAAGATGGTCATGGGCCTAGTTCAGATTTTACTTCCTCTCAGGACTTTGTAAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTTGTAATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGTGTTGAATGGAATGAACTGGATACACTTCAAGAAGATTATTGTATGACTCATGAGCACACTACAACACCAATTCATCCTTCAAACGCAGGTGAGGTGTCTGCTGCATCTAAGCCTGCTGGAGGTTGA 1395 0.4552 MSGTRASPAAAAASANPPEQIMQSMKRQLPFSSMKPPFVAAGDYHRFATDHRRNVDQEAEAIVVKTPQLKRKSETVDFEADSGDRMIPGSTEAANSPFQTPVSGKMGKGGKSSRLTKCNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFANLQAEVENLTMEERRLDEQIREMQEKLRNLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPPSPELNKHQSAVAPEDTGKDIEVHGQDGHGPSSDFTSSQDFVSGIMKIVPSDVACNADYWLLSDADVSITDMWRTEPGVEWNELDTLQEDYCMTHEHTTTPIHPSNAGEVSAASKPAGG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi452g00004 464 CDD E2F_DD 221 327 IPR032198 GO:0046983
Gabi452g00004 464 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667|GO:0006355
Gabi452g00004 464 PANTHER TRANSCRIPTION FACTOR E2F 89 424 IPR015633 GO:0000978|GO:0006357
Gabi452g00004 464 MobiDBLite consensus disorder prediction 114 141 - -
Gabi452g00004 464 SUPERFAMILY E2F-DP heterodimerization region 223 327 IPR037241 -
Gabi452g00004 464 SUPERFAMILY "Winged helix" DNA-binding domain 145 208 IPR036390 -
Gabi452g00004 464 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667|GO:0006355
Gabi452g00004 464 MobiDBLite consensus disorder prediction 1 26 - -
Gabi452g00004 464 Gene3D - 139 212 IPR036388 -
Gabi452g00004 464 MobiDBLite consensus disorder prediction 343 380 - -
Gabi452g00004 464 Gene3D - 217 327 - -
Gabi452g00004 464 Coils Coil 223 264 - -
Gabi452g00004 464 FunFam E2F transcription factor 1 139 212 - -
Gabi452g00004 464 MobiDBLite consensus disorder prediction 358 372 - -
Gabi452g00004 464 Coils Coil 161 181 - -
Gabi452g00004 464 MobiDBLite consensus disorder prediction 444 464 - -
Gabi452g00004 464 MobiDBLite consensus disorder prediction 74 141 - -
Gabi452g00004 464 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi452g00004 Gabi-Chr452 114740 120082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi452g00004 20 463 E2F-DP Transcription Factor Family AT5G22220 57.384 1.38e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi452g00004 E2F_CC-MB 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi452g00004 K06620 - gmx:100819817 783.867