Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4529g00005 ATGGAGCCCTTAAGCCACAACCAGAACTACCTCTATATAGATACCATACCTTTAGAGTACTCATTTCCCCATAAATTCTCTTCACCACAGCCACAGGTTGAGGTTGATAGGTCTACACCATCACCGCACCCTACCATGGTCAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGTCGGAAGAAAATCAATAGCTTGATTTCTTCACTTCGTTCACTTCTTCCAGTTGCAAATCAAACGAAAAAAATGAGCATTCCGACAACAATTTCGCGAGTAGTAAATTACATACCCGAGTTAAAACAGAAGCTGGAAGGGCTAACTAAGAAGAAAGAGGAGCTTCAATGGAGAATTAATTCTCCCCAAGGAGATTCAGTGAACAAAGAGTTTCAAAGGAAGATTCCCCATTACAATTCTAATTTTGTAGTTTCAACAAGTAGACTCAATGATAATGAGGTTGCTATTCAGATTTCCTCTAATGAAGTCCACATGACTCCACTATCTGAGATCTTGATGTTTTTAGAAAATTATGGGCTTTTTCTGCTAAATGTTTCTTCCTCTGAAACCTTTGGAGAGAGGGTCTTCTATAACTTGCATTTCCAGGTGGAAAAAACTCAGAGATTAGATTCCGATATTCTAACTGAGAAGCTTTTCTCAATATATGAGAAGAAGGAAAGGATTTTCTAA 684 0.3845 MEPLSHNQNYLYIDTIPLEYSFPHKFSSPQPQVEVDRSTPSPHPTMVKKLNHNASERDRRKKINSLISSLRSLLPVANQTKKMSIPTTISRVVNYIPELKQKLEGLTKKKEELQWRINSPQGDSVNKEFQRKIPHYNSNFVVSTSRLNDNEVAIQISSNEVHMTPLSEILMFLENYGLFLLNVSSSETFGERVFYNLHFQVEKTQRLDSDILTEKLFSIYEKKERIF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4529g00005 227 Pfam Helix-loop-helix DNA-binding domain 48 99 IPR011598 GO:0046983
Gabi4529g00005 227 Coils Coil 96 116 - -
Gabi4529g00005 227 Gene3D - 43 131 IPR036638 GO:0046983
Gabi4529g00005 227 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 41 216 - -
Gabi4529g00005 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 99 IPR011598 GO:0046983
Gabi4529g00005 227 FunFam Transcription factor ORG2 43 128 - -
Gabi4529g00005 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 118 IPR036638 GO:0046983
Gabi4529g00005 227 SMART finulus 53 105 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4529g00005 Gabi-Chr4529 39591 41292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4529g00005 15 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.519 1.23e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4529g00005 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4529g00005 - - gmx:100803424 271.937