Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00093 ATGTCAAGGGACGATGGCAGCCAATACAGCCTCACCGGCATTCCTCTTCCTTCTCTCGGTGCCACCGCCGCCACCAGCTGCCGGAGAGCCCATCTCCGAACTTTCATTATCTCCCCTTATTACTCTCGTTATAGACTGTGGGATACGTTTCTGGTGTTTTTAGTATTCTACACTGCATGGGTGTGCCCGTTTGAATTCGGGTTTCTTAATGAACCAACGGTTGCTCTTTCCATTACTGACAATGTTGTGAATGCTTTTTTTGCCATTGACATTGTTCTTACATTCTTTGTTGCCTACCTCGACAAGGCTTCTTATCTTCTTGTGGACGAACCAAAGCTCATTGCTTTTAGATATGCAAAAACATGGCTTGCCTTTGATGTCATCTCTACCATCCCTTCTGAACTTGCCCGCAAAATTTTGCCCCGTCCTCTTAAGACTTACGGTTACTTCAATATGCTTCGCCTTTGGCGTCTCCGCAGAGTCAGTGCCATGTTTGCAAGATTAGAAAAAGACAGAAATTTTAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTACTATTTTCTCGCTGAAAGTCATAACCAGAAAGCTTCATGGCTTGGGCTTATTGCTGATGGTGTTAAGGAAGATATCGCGGGTCGCTATGTAACATCGGTATACTGGTCCATAGTGACTCTTTCAACAGTTGGTTATGGTGATCTGCATCCTGTAAATACAAGGGAGATGATTTTTGACACATTCTATATGCTCTTTAATCTGGGACTAACCTCTTATCTCATTGGAAACATGACAAACTTAGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTACAATCTGCCACAGGTTTTGCCCAACGGAATCAATTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGACTGCAGCAACAAGAGATCATTGAATCCCTTCCAAAAGCTATTCGATCTAGCATCTCACACTACCTATTCTATTCACTTGTGGACAAAGTATACTTGTTTCATGGAGTGTCAAATGACCTTCTTTTTCAATTGGTCACGGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGGTTTTGCAGAATGAAGCGCCAACCGACTTTTATATCTTTGTCACTGGTGCTGCAGAACTTATCATACGAAAGAATGGAATAGAACAGGTCGTTGGTGAGGCACAGTCAGGAGATGTAGTTGGAGAAATAGGAGTTCTATGTTACAGACCACAGATTTTTACAGTTCGAACCAAACGATTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTATAAATCTTGCTCATTCAAATGTTGGAGATGGGACAATAGTCATGAACAACTTTCTCCAGCATTTGCAAGAATCAAAGGCGCCAGGGATGGATGTTATTTTGAAAGAAACAGAGGCCATGCTGGCTCGGGGTAGAATGGATTTGCCCATCAGCACATGCTTTGCAGCAAACAGAAATGATGATCTATTGTTAAATCGGTTGCTGAAGAAGGGTTCAGATCCAAATGAAGTAGATAAGAACGGAAGGACAGCACTGCATATTGCAGCTTCTAAAGGCAATGAGCACTGTGTAACTTTGCTTCTAGAATATGGTGCTGATCCCAATAGCAAAGATTTGGATGGAAGCGTTCCACTATGGGAAGCAATGCTGGGTAAGCATGAATCTGCCATGAAACTTCTCATAGACAATGGTGCAGAAATATCTTCTGCCGATGCAGGCCATCTAGCATGCACTGCTGTTGAGCAAAATAACATGGAACTGCTCAAGGAAATTGTTCAATATGGTTTGGACGTGACACAATCCAAAAGGAATGGTTCCACTGCTCTGCATGCTGCAGTATGTGAAGGAAATACTGAGCTGGTGAAGTTCTTTCTAGACCAAGGAGCAGAGATTGATAAGCAAGATGCTAATGGCTGGACTCCAAGGGCTTTGGCAGAACATCAAGGCCATGAAGAAATTAAAAATATATTCCAGAACATTGGAGAGAGTAGAAGACCACCTGTTTTTCCAACATCAAAGAATGAGTGTGTGTCATGCATTGGGAGGTTTCAAAGTGAACCCACTATGCGTGCTCTTTCCCAAGAAAGCATGCCACTGCCACCTCAACAAGATTTAACTTGGCTAGATAATCATCGAAGGAGAAGGGCCAACACTTTTCATAACTCCATTTTTGGAATGATCTCAGCTGCCAATCGTGGTAAGGCATCTCAAAGCAATAACACTAGTACAGGGAACGTGAGTGGATCAATAGCAAGAGTGACACTTAGTTGTCCTGAAAAAGGTGAACATGCTACAAAGCTTGTTTTGCTGCCTAAGTCCCTCGAAGAACTACTAGATATTGGTGCCAAAAAGTTTGATTTCTCTCCCACCAAAATTTTGACCAAAGAAGGAGCTGAAGTTGATGATATAAGGCTTATAAGAGATGGTGATCATCTTATTATTACACGGGACTGA 2547 0.4229 MSRDDGSQYSLTGIPLPSLGATAATSCRRAHLRTFIISPYYSRYRLWDTFLVFLVFYTAWVCPFEFGFLNEPTVALSITDNVVNAFFAIDIVLTFFVAYLDKASYLLVDEPKLIAFRYAKTWLAFDVISTIPSELARKILPRPLKTYGYFNMLRLWRLRRVSAMFARLEKDRNFNYFWVRCSKLICVTLFSVHFAACFYYFLAESHNQKASWLGLIADGVKEDIAGRYVTSVYWSIVTLSTVGYGDLHPVNTREMIFDTFYMLFNLGLTSYLIGNMTNLVVHGTSRTRKYRDTVQSATGFAQRNQLPIRLQEQMLAHLFMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYSLVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKEDVVLQNEAPTDFYIFVTGAAELIIRKNGIEQVVGEAQSGDVVGEIGVLCYRPQIFTVRTKRLSQILRLNRTTFINLAHSNVGDGTIVMNNFLQHLQESKAPGMDVILKETEAMLARGRMDLPISTCFAANRNDDLLLNRLLKKGSDPNEVDKNGRTALHIAASKGNEHCVTLLLEYGADPNSKDLDGSVPLWEAMLGKHESAMKLLIDNGAEISSADAGHLACTAVEQNNMELLKEIVQYGLDVTQSKRNGSTALHAAVCEGNTELVKFFLDQGAEIDKQDANGWTPRALAEHQGHEEIKNIFQNIGESRRPPVFPTSKNECVSCIGRFQSEPTMRALSQESMPLPPQQDLTWLDNHRRRRANTFHNSIFGMISAANRGKASQSNNTSTGNVSGSIARVTLSCPEKGEHATKLVLLPKSLEELLDIGAKKFDFSPTKILTKEGAEVDDIRLIRDGDHLIITRD 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00093 848 Gene3D Jelly Rolls 326 486 IPR014710 -
Gabi4527g00093 848 Pfam KHA, dimerisation domain of potassium ion channel 783 845 IPR021789 -
Gabi4527g00093 848 PRINTS EAG/ELK/ERG potassium channel family signature 254 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4527g00093 848 PRINTS EAG/ELK/ERG potassium channel family signature 91 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4527g00093 848 PRINTS EAG/ELK/ERG potassium channel family signature 228 245 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4527g00093 848 PRINTS EAG/ELK/ERG potassium channel family signature 272 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4527g00093 848 PRINTS EAG/ELK/ERG potassium channel family signature 80 90 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4527g00093 848 PRINTS EAG/ELK/ERG potassium channel family signature 57 64 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4527g00093 848 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Gabi4527g00093 848 ProSiteProfiles KHA domain profile. 783 848 IPR021789 -
Gabi4527g00093 848 SMART cnmp_10 360 477 IPR000595 -
Gabi4527g00093 848 CDD CAP_ED 360 465 IPR000595 -
Gabi4527g00093 848 SUPERFAMILY Voltage-gated potassium channels 39 281 - -
Gabi4527g00093 848 Gene3D - 45 281 - -
Gabi4527g00093 848 ProSiteProfiles cAMP/cGMP binding motif profile. 360 479 IPR000595 -
Gabi4527g00093 848 SMART ANK_2a 635 664 IPR002110 GO:0005515
Gabi4527g00093 848 SMART ANK_2a 602 631 IPR002110 GO:0005515
Gabi4527g00093 848 SMART ANK_2a 538 567 IPR002110 GO:0005515
Gabi4527g00093 848 SMART ANK_2a 505 534 IPR002110 GO:0005515
Gabi4527g00093 848 SMART ANK_2a 571 600 IPR002110 GO:0005515
Gabi4527g00093 848 SUPERFAMILY Ankyrin repeat 511 692 IPR036770 -
Gabi4527g00093 848 Gene3D - 507 690 IPR036770 -
Gabi4527g00093 848 FunFam Potassium channel KAT3 46 282 - -
Gabi4527g00093 848 Pfam Ankyrin repeats (3 copies) 512 601 IPR002110 GO:0005515
Gabi4527g00093 848 Pfam Ankyrin repeats (3 copies) 610 684 IPR002110 GO:0005515
Gabi4527g00093 848 PRINTS Ankyrin repeat signature 539 554 IPR002110 GO:0005515
Gabi4527g00093 848 PRINTS Ankyrin repeat signature 587 601 IPR002110 GO:0005515
Gabi4527g00093 848 ProSiteProfiles Ankyrin repeat region circular profile. 538 569 - -
Gabi4527g00093 848 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Gabi4527g00093 848 PANTHER POTASSIUM CHANNEL AKT1 7 845 IPR045319 GO:0005249|GO:0006813
Gabi4527g00093 848 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Gabi4527g00093 848 Pfam Ion transport protein 45 287 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi4527g00093 848 ProSiteProfiles Ankyrin repeat region circular profile. 635 666 - -
Gabi4527g00093 848 SUPERFAMILY cAMP-binding domain-like 285 480 IPR018490 -
Gabi4527g00093 848 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Gabi4527g00093 848 FunFam Potassium channel KAT2 348 484 - -
Gabi4527g00093 848 ProSiteProfiles Ankyrin repeat profile. 538 570 IPR002110 GO:0005515
Gabi4527g00093 848 Pfam Cyclic nucleotide-binding domain 380 464 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00093 Gabi-Chr4527 736895 748216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00093 1 848 Ion Channels AT2G25600 60.627 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00093 K21867 - gmx:100802964 1296.18