Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00071 ATGTCTCAGACCAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCTTCGGACCCTGTTGCTATTGATGCCCCTGGTGGTTTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCATCTTATATTGAGACCCAATTAATTAAGGCAAGGGAGCAACAGCAGCAGCAACAACAGCAGCAACAGCAACAGTCACAGCCCCAGCAGTCACAGCAGCAACAACAGCAGCAGCAACACATGCAGATGCAACAGCTTCTGTTGCAGAGGCATGCGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAACAGCAACAGCAGCCACAACAACAGCAACAACAACCACCACCACAACAACAGCAAAGTAGGGATAGGGCTCATCTCTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTGGCAACAAAGATGTATGAAGAGAGGTTAAAATTGCCCCTTCAGAGGGATTCTTTGGATGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACTCAAATCATGCCTCAATATTGAAATCAGCTGCAGCTACTGGCCAGCCTTCGGGGCAAGTTTTGCACGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGCCAGCAATTACCAGGGTCTACTATGGATATTAAGAGTGAGATTAATCCCATCTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCCTTGATAGCAATTCCTGGATCAAATCAAGGTGACAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGTTTCGAGCAACTACGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCATCAACTTCAAATGTTGACACCTCAGCATCAGCAACAGCTTTTGCTTGCACAGCAAAATTTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTCAGAATGCTTTTGAGTAATAGGAATATGGGGGGCCTAAATAAGGATGGTCTTTCAAATACTGTTGGTGATGTGGTATCAAATGTTGGATCACCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATTCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAACATCAACAGTCAAGCACCAATGCACAACAACAGCAACTTCAGCAGCATGCTCTTTCGAATCCGCAATCCCAGACATCAAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGGGGAAATGATCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTTCTGGAACTGCAAATACGACAGGCCCATCGCCAAGTTCAGCTCCCTCGACTCCCTCAACTCACACGCCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGCAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCGTCAAACCAGTTGTGGGGTGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGGTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCACAAGCAAAGTTTCTTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTCTATGGTACACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCAGCTTTGATCACTGATGTCCGTTTCAGTCCAAACATACCTCGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTTACGGGACATTCTGCATCTGTTATGTCTCTAGATTTTCACCCAAATAAAGATGACCTGATCTGCTCCTGTGATAGTGATGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGTCTAGGGAGATACCTTGCTGCAGCTGCAGATAACATAGTGTCTATACTTGATGTGGAGACTCAAGCATGCCGATATTCATTAAAGGCACACACAAAACCAATACATTCTGTGTGTTGGGACCCGTCTGGAGAGTCGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGAACCTTGGAACAGGGAGTGAAGGGGAATGTGTTCATGAGCTCAGCTGTAACGGCAATAAGTTTCACTCATGTGTTTTCCACCCAACTTACCCTTCATTACTGGTCGTTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAACGAGAACAAGACAATGACACTGCCTGCTCATGATGGTCTTATTACTGCGTTGGCTGTTTCAAGTGTACATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2700 0.4556 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQSQPQQSQQQQQQQQHMQMQQLLLQRHAQQQQQQQQQQQQQQQPQQQQQQPPPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDSNHASILKSAAATGQPSGQVLHGAAGGMSPQVQARSQQLPGSTMDIKSEINPILNPRAAGPEGSLIAIPGSNQGDNNLTLKGWPLTGFEQLRSGLLQQQKPFIQAPQPFHQLQMLTPQHQQQLLLAQQNLASPSASEESRRLRMLLSNRNMGGLNKDGLSNTVGDVVSNVGSPLQGGGPPFPRGDTDILMKLKLAQLQQQHQQSSTNAQQQQLQQHALSNPQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGTGTLTSPSNQLWGDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSALITDVRFSPNIPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDSDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAADNIVSILDVETQACRYSLKAHTKPIHSVCWDPSGESLASVSEDSVRVWNLGTGSEGECVHELSCNGNKFHSCVFHPTYPSLLVVGCYQSLELWNMNENKTMTLPAHDGLITALAVSSVHGLVASASHDKFIKLWK 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 782 822 IPR001680 GO:0005515
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 692 IPR001680 GO:0005515
Gabi4527g00071 899 Gene3D - 594 745 IPR015943 GO:0005515
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 657 692 - -
Gabi4527g00071 899 SUPERFAMILY WD40 repeat-like 613 899 IPR036322 GO:0005515
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 700 742 IPR001680 GO:0005515
Gabi4527g00071 899 MobiDBLite consensus disorder prediction 233 255 - -
Gabi4527g00071 899 Gene3D - 746 899 IPR015943 GO:0005515
Gabi4527g00071 899 MobiDBLite consensus disorder prediction 132 159 - -
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 867 899 - -
Gabi4527g00071 899 MobiDBLite consensus disorder prediction 461 521 - -
Gabi4527g00071 899 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 899 - -
Gabi4527g00071 899 SMART Lish 8 40 IPR006594 GO:0005515
Gabi4527g00071 899 MobiDBLite consensus disorder prediction 413 450 - -
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 656 IPR001680 GO:0005515
Gabi4527g00071 899 Coils Coil 411 431 - -
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 867 899 IPR001680 GO:0005515
Gabi4527g00071 899 MobiDBLite consensus disorder prediction 413 538 - -
Gabi4527g00071 899 SMART WD40_4 736 772 IPR001680 GO:0005515
Gabi4527g00071 899 SMART WD40_4 650 689 IPR001680 GO:0005515
Gabi4527g00071 899 SMART WD40_4 775 813 IPR001680 GO:0005515
Gabi4527g00071 899 SMART WD40_4 819 858 IPR001680 GO:0005515
Gabi4527g00071 899 SMART WD40_4 608 647 IPR001680 GO:0005515
Gabi4527g00071 899 SMART WD40_4 693 733 IPR001680 GO:0005515
Gabi4527g00071 899 SMART WD40_4 860 899 IPR001680 GO:0005515
Gabi4527g00071 899 ProSitePatterns Trp-Asp (WD) repeats signature. 676 690 IPR019775 -
Gabi4527g00071 899 CDD WD40 615 899 - -
Gabi4527g00071 899 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gabi4527g00071 899 Pfam LisH 10 36 IPR006594 GO:0005515
Gabi4527g00071 899 Pfam WD domain, G-beta repeat 862 899 IPR001680 GO:0005515
Gabi4527g00071 899 Pfam WD domain, G-beta repeat 654 689 IPR001680 GO:0005515
Gabi4527g00071 899 Pfam WD domain, G-beta repeat 696 733 IPR001680 GO:0005515
Gabi4527g00071 899 Pfam WD domain, G-beta repeat 778 813 IPR001680 GO:0005515
Gabi4527g00071 899 Pfam WD domain, G-beta repeat 616 646 IPR001680 GO:0005515
Gabi4527g00071 899 Coils Coil 118 138 - -
Gabi4527g00071 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 700 738 - -
Gabi4527g00071 899 FunFam Transcriptional corepressor LEUNIG 743 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00071 Gabi-Chr4527 607661 619842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00071 694 898 Miscellaneous Gene Families AT5G08390 23.810 5.12e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi4527g00071 WD40 0.0063 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00071 - - gmx:100816263 1286.94