Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00070 ATGTCTCAGACCAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCTTCGGACCCTGTTGCTATTGATGCCCCTGGTGGTTTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCATCTTATATTGAGACCCAATTAATTAAGGCAAGGGAGCAACAGCAGCAGCAACAACAGCAGCAACAGCAACAGTCACAGCCCCAGCAGTCACAGCAGCAACAACAGCAGCAGCAACACATGCAGATGCAACAGCTTCTGTTGCAGAGGCATGCGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAACAGCAACAGCAGCCACAACAACAGCAACAACAACCACCACCACAACAACAGCAAAGTAGGGATAGGGCTCATCTCTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTGGCAACAAAGATGTATGAAGAGAGGTTAAAATTGCCCCTTCAGAGGGATTCTTTGGATGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACTCAAATCATGCCTCAATATTGAAATCAGCTGCAGCTACTGGCCAGCCTTCGGGGCAAGTTTTGCACGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGCCAGCAATTACCAGGGTCTACTATGGATATTAAGAGTGAGATTAATCCCATCTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCCTTGATAGCAATTCCTGGATCAAATCAAGGTGACAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGTTTCGAGCAACTACGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCATCAACTTCAAATGTTGACACCTCAGCATCAGCAACAGCTTTTGCTTGCACAGCAAAATTTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTCAGAATGCTTTTGAGTAATAGGAATATGGGGGGCCTAAATAAGGATGGTCTTTCAAATACTGTTGGTGATGTGGTATCAAATGTTGGATCACCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATTCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAACATCAACAGTCAAGCACCAATGCACAACAACAGCAACTTCAGCAGCATGCTCTTTCGAATCCGCAATCCCAGACATCAAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGGGGAAATGATCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTTCTGGAACTGCAAATACGACAGGCCCATCGCCAAGTTCAGCTCCCTCGACTCCCTCAACTCACACGCCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGCAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCGTCAAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGGTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCACAAGCAAAGTTTCTTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTCTATGGTACACAGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCAGCTTTGATCACTGATGTCCGTTTCAGTCCAAACATACCTCGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTTACGGGACATTCTGCATCTGTTATGTCTCTAGATTTTCACCCAAATAAAGATGACCTGATCTGCTCCTGTGATAGTGATGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGTCTAGGGAGATACCTTGCTGCAGCTGCAGATAACATAGTGTCTATACTTGATGTGGAGACTCAAGCATGCCGATATTCATTAAAGGCACACACAAAACCAATACATTCTGTGTGTTGGGACCCGTCTGGAGAGTCGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGAACCTTGGAACAGGGAGTGAAGGGGAATGTGTTCATGAGCTCAGCTGTAACGGCAATAAGTTTCACTCATGTGTTTTCCACCCAACTTACCCTTCATTACTGGTCGTTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAACGAGAACAAGACAATGACACTGCCTGCTCATGATGGTCTTATTACTGCGTTGGCTGTTTCAAGTGTACATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2673 0.4557 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQSQPQQSQQQQQQQQHMQMQQLLLQRHAQQQQQQQQQQQQQQQPQQQQQQPPPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDSNHASILKSAAATGQPSGQVLHGAAGGMSPQVQARSQQLPGSTMDIKSEINPILNPRAAGPEGSLIAIPGSNQGDNNLTLKGWPLTGFEQLRSGLLQQQKPFIQAPQPFHQLQMLTPQHQQQLLLAQQNLASPSASEESRRLRMLLSNRNMGGLNKDGLSNTVGDVVSNVGSPLQGGGPPFPRGDTDILMKLKLAQLQQQHQQSSTNAQQQQLQQHALSNPQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSALITDVRFSPNIPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDSDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAADNIVSILDVETQACRYSLKAHTKPIHSVCWDPSGESLASVSEDSVRVWNLGTGSEGECVHELSCNGNKFHSCVFHPTYPSLLVVGCYQSLELWNMNENKTMTLPAHDGLITALAVSSVHGLVASASHDKFIKLWK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00070 890 FunFam Transcriptional corepressor LEUNIG 734 890 - -
Gabi4527g00070 890 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 890 - -
Gabi4527g00070 890 ProSitePatterns Trp-Asp (WD) repeats signature. 667 681 IPR019775 -
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 647 IPR001680 GO:0005515
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 729 - -
Gabi4527g00070 890 Gene3D - 582 738 IPR015943 GO:0005515
Gabi4527g00070 890 MobiDBLite consensus disorder prediction 233 255 - -
Gabi4527g00070 890 SMART WD40_4 641 680 IPR001680 GO:0005515
Gabi4527g00070 890 SMART WD40_4 766 804 IPR001680 GO:0005515
Gabi4527g00070 890 SMART WD40_4 599 638 IPR001680 GO:0005515
Gabi4527g00070 890 SMART WD40_4 810 849 IPR001680 GO:0005515
Gabi4527g00070 890 SMART WD40_4 684 724 IPR001680 GO:0005515
Gabi4527g00070 890 SMART WD40_4 727 763 IPR001680 GO:0005515
Gabi4527g00070 890 SMART WD40_4 851 890 IPR001680 GO:0005515
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 858 890 - -
Gabi4527g00070 890 MobiDBLite consensus disorder prediction 132 159 - -
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 858 890 IPR001680 GO:0005515
Gabi4527g00070 890 SUPERFAMILY WD40 repeat-like 604 890 IPR036322 GO:0005515
Gabi4527g00070 890 CDD WD40 606 890 - -
Gabi4527g00070 890 MobiDBLite consensus disorder prediction 461 521 - -
Gabi4527g00070 890 Pfam WD domain, G-beta repeat 769 804 IPR001680 GO:0005515
Gabi4527g00070 890 Pfam WD domain, G-beta repeat 607 637 IPR001680 GO:0005515
Gabi4527g00070 890 Pfam WD domain, G-beta repeat 687 724 IPR001680 GO:0005515
Gabi4527g00070 890 Pfam WD domain, G-beta repeat 645 680 IPR001680 GO:0005515
Gabi4527g00070 890 Pfam WD domain, G-beta repeat 853 890 IPR001680 GO:0005515
Gabi4527g00070 890 SMART Lish 8 40 IPR006594 GO:0005515
Gabi4527g00070 890 MobiDBLite consensus disorder prediction 413 450 - -
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 683 IPR001680 GO:0005515
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 813 IPR001680 GO:0005515
Gabi4527g00070 890 Coils Coil 411 431 - -
Gabi4527g00070 890 Gene3D - 739 890 IPR015943 GO:0005515
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 683 - -
Gabi4527g00070 890 MobiDBLite consensus disorder prediction 413 538 - -
Gabi4527g00070 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 733 IPR001680 GO:0005515
Gabi4527g00070 890 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gabi4527g00070 890 Pfam LisH 10 36 IPR006594 GO:0005515
Gabi4527g00070 890 Coils Coil 118 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00070 Gabi-Chr4527 607661 619842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00070 685 889 Miscellaneous Gene Families AT5G08390 23.810 4.01e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi4527g00070 WD40 0.0062 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00070 - - gmx:100816263 1261.9