Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00061 ATGGACGACGTCGTTATTGAAGGTCCACCTGAAACTTACCCGTTGCTGATGTCGCATGTCATTGACATAACGGGTGCGATTCCCGATGCTTCAGCTTCAGCTTCAGCTTCCACTTCTACCTCTACTCATGACAATACACGTGTTAATAGCATAGATTTTGGTGTACCTGGTGGTGGTGGTGGTGGTGGTTCGAATGGATCGAATTCTAGGACACGTAGGCGTAGTAGTATTAGTAGTAGTAGTAGTAATAATAATAATAGTGTATTGAATTCAGGGTTATGGATATGTATTGAGGTAATCCTCACAGTAAGCCAGGTTGTTGCGTCTGTTGTTGTTTTGTCTTTGTCAAGGCATGAGCATGAGCATCCTCGTACCCCTTTGTTTGCATGGATTGTCGGTTATGCATCTGGATGTGTTGCTACCCTTCCTTTACTCGCTTGGCGATATTATCACAATCGAAATAACCGTGTTCGAGAGCAAGATTCATCATCTCAAACCTCTCCTTCAGGGACAAACGGAGGAGGAGGAGAAAATGTTCCATCATCTAGAAGCAATCGAGATTCATGGTTGATGAATAGGAGACTGAAGCTACTTGCGGAATACTTGAAAATTGCCATAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATATTTGGAGGACATTCATCTGCCGATGAAGCTCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTCAACTGCATCTGTTATGCTATGCCCTTCATTCTATGTGCCACAATCTGCTGCTGTCTGCCTTGTATAATTTCCATCCTCGGGGTTAGAGAGAATCTGACACAAACCCAAGGTGCAACCTCTGACTCTATCAATGCTCTGCCGACTTACAAGTTCAAAGTGAAGAAAAATAAAAGCAGGGATGAAAGCAACTCAGCCGTTGGTGAAGGTGGAATTGTAGCTGCAGGAACTGAAAAGGAACGAATGGTCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCGAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTAGACAAGTGGTTGAAGATGAATGCATTATGCCCGCTTTGCAAGAGTGAAGTGGGTGAGAATGTAACAGGATCAGTCTCGGGGGTTGATAATGGCCTAGCCAGTACCTCATCCTAA 1194 0.4355 MDDVVIEGPPETYPLLMSHVIDITGAIPDASASASASTSTSTHDNTRVNSIDFGVPGGGGGGGSNGSNSRTRRRSSISSSSSNNNNSVLNSGLWICIEVILTVSQVVASVVVLSLSRHEHEHPRTPLFAWIVGYASGCVATLPLLAWRYYHNRNNRVREQDSSSQTSPSGTNGGGGENVPSSRSNRDSWLMNRRLKLLAEYLKIAIDCFFAIWFVVGNVWIFGGHSSADEAPNLYRLCVVFLTFNCICYAMPFILCATICCCLPCIISILGVRENLTQTQGATSDSINALPTYKFKVKKNKSRDESNSAVGEGGIVAAGTEKERMVSGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKMNALCPLCKSEVGENVTGSVSGVDNGLASTSS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00061 397 FunFam E3 ubiquitin-protein ligase 316 382 - -
Gabi4527g00061 397 SUPERFAMILY RING/U-box 326 380 - -
Gabi4527g00061 397 MobiDBLite consensus disorder prediction 62 85 - -
Gabi4527g00061 397 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 377 - -
Gabi4527g00061 397 Pfam Ring finger domain 333 374 IPR001841 -
Gabi4527g00061 397 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Gabi4527g00061 397 MobiDBLite consensus disorder prediction 32 49 - -
Gabi4527g00061 397 SMART ring_2 333 373 IPR001841 -
Gabi4527g00061 397 MobiDBLite consensus disorder prediction 158 185 - -
Gabi4527g00061 397 MobiDBLite consensus disorder prediction 32 85 - -
Gabi4527g00061 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 382 IPR013083 -
Gabi4527g00061 397 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00061 Gabi-Chr4527 548175 551976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00061 14 384 C3H Transcription Factor Family AT1G80400 46.098 1.27e-126 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00061 - - gmx:100795904 507.679