Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00058 ATGGGTGTGGATTACTACAATATATTGAAGGTTGACAGAAATGCTACGGAGGATGATTTGAAGAAAGCATATAGAAAGTTGGCCATGAAATGGCATCCTGACAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAAGTTCAAGCAGATCTCTGAGGCCTATGAGGTATTGAGCGATCCTCAGAAAAAGGTGATTTATGATCAGGATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCTGGTAATGAACCATCAAGTGGGTTTAATCCCAGAAATGCAGAGGACATTTTTGCAGAATTCTTTGCAAGTAGCCCTTTTGGATTTGGATTATCTGGACCAGGGAAACGGCCAATTCCAGAAACAGAGATATTAACCATTGATATAAAGCCCGGATGGAAGAAAGGGACAAAGATTACTTTCCCAGATAAAGGGAATCAGCAACCAAATCAACTGCCAGCAGACCTTGTATTTGTGATTGATGAGAAGCCTCATGATTTCTTCAAGAGAGATGGCAACGACCTCATTATGAACCAAAGGGTGTCACTAGCTGAAGCTATTGGAGGAACTTCAATAAATCTCACAACACTTGATAGACGTAGTTTATGTATCTCAGTGACTGACATTGTGAGCCCTGGTTATGAGTTTGTTGTTGCAAATGAAGGAATGCCAAAAACAAAGGAACCTGGTCATAGGGGGGATTTGAGGATCAAATTTGAGGTTAAGTTCCCTACAAAACTGACCACAGAGCAACGAGCAGGACTCAAGCGAGCATTGGGAGGTTGA 783 0.424 MGVDYYNILKVDRNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEAKFKQISEAYEVLSDPQKKVIYDQDGEEGLKDRPPPGNEPSSGFNPRNAEDIFAEFFASSPFGFGLSGPGKRPIPETEILTIDIKPGWKKGTKITFPDKGNQQPNQLPADLVFVIDEKPHDFFKRDGNDLIMNQRVSLAEAIGGTSINLTTLDRRSLCISVTDIVSPGYEFVVANEGMPKTKEPGHRGDLRIKFEVKFPTKLTTEQRAGLKRALGG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00058 260 Pfam DnaJ C terminal domain 71 243 IPR002939 -
Gabi4527g00058 260 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4527g00058 260 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4527g00058 260 SUPERFAMILY HSP40/DnaJ peptide-binding domain 117 165 IPR008971 GO:0006457|GO:0051082
Gabi4527g00058 260 Gene3D DnaJ domain 3 109 IPR036869 -
Gabi4527g00058 260 CDD DnaJ 4 59 IPR001623 -
Gabi4527g00058 260 Gene3D - 163 259 - -
Gabi4527g00058 260 SMART dnaj_3 3 62 IPR001623 -
Gabi4527g00058 260 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 252 IPR008971 GO:0006457|GO:0051082
Gabi4527g00058 260 MobiDBLite consensus disorder prediction 62 78 - -
Gabi4527g00058 260 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4527g00058 260 SUPERFAMILY Chaperone J-domain 3 109 IPR036869 -
Gabi4527g00058 260 FunFam DNAJ heat shock family protein 163 258 - -
Gabi4527g00058 260 Gene3D - 110 162 - -
Gabi4527g00058 260 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4527g00058 260 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4527g00058 260 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4527g00058 260 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4527g00058 260 CDD DnaJ_C 118 246 - -
Gabi4527g00058 260 FunFam Dnaj homolog subfamily b member 111 162 - -
Gabi4527g00058 260 MobiDBLite consensus disorder prediction 61 90 - -
Gabi4527g00058 260 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 117 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00058 Gabi-Chr4527 534275 536492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00058 5 67 C2H2 Transcription Factor Family AT1G74250 37.313 9.43e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00058 K09510 - smo:SELMODRAFT_231730 361.303