Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00056 ATGGGTGTGGATTACTACAATATATTGAAGGTTGACAGAAATGCTACGGAGGATGATTTGAAGAAAGCATATAGAAAGTTGGCCATGAAATGGCATCCTGACAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAAGTTCAAGCAGATCTCTGAGGCCTATGAGGTATTGAGCGATCCTCAGAAAAAGGTGATTTATGATCAGGATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCTGGTAATGAACCATCAAGTGGGTTTAATCCCAGAAATGCAGAGGACATTTTTGCAGAATTCTTTGCAAGTAGCCCTTTTGGATTTGGATTATCTGGACCAGGGAAGTCCAAGAGATTCCAATCTGATGGAGGGGGAACATTTGGTGGATTTAGTGGAAGTGACAATAATTTTAGAACATACAGTGAAAGGGGGAACATGCCAAAGAAGCCAACACCTGTGGAAAGCAAATTGCCTTGCAGTTTGGAAGAGTTATACTCTGGATCTACAAGGAAAATGAAGATCTCAAGAACTGTGATGGATGCCAATGGACGGCCAATTCCAGAAACAGAGATATTAACCATTGATATAAAGCCCGGATGGAAGAAAGGGACAAAGATTACTTTCCCAGATAAAGGGAATCAGCAACCAAATCAACTGCCAGCAGACCTTGTATTTGTGATTGATGAGAAGCCTCATGATTTCTTCAAGAGAGATGGCAACGACCTCATTATGAACCAAAGGGTGTCACTAGCTGAAGCTATTGGAGGAACTTCAATAAATCTCACAACACTTGATAGACGTAGTTTATGTATCTCAGTGACTGACATTGTGAGCCCTGGTTATGAGTTTGTTGTTGCAAATGAAGGAATGCCAAAAACAAAGGAACCTGGTCATAGGGGGGATTTGAGGATCAAATTTGAGGTTAAGTTCCCTACAAAACTGACCACAGAGCAACGAGCAGGACTCAAGCGAGCATTGGGAGGTTGA 987 0.4235 MGVDYYNILKVDRNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEAKFKQISEAYEVLSDPQKKVIYDQDGEEGLKDRPPPGNEPSSGFNPRNAEDIFAEFFASSPFGFGLSGPGKSKRFQSDGGGTFGGFSGSDNNFRTYSERGNMPKKPTPVESKLPCSLEELYSGSTRKMKISRTVMDANGRPIPETEILTIDIKPGWKKGTKITFPDKGNQQPNQLPADLVFVIDEKPHDFFKRDGNDLIMNQRVSLAEAIGGTSINLTTLDRRSLCISVTDIVSPGYEFVVANEGMPKTKEPGHRGDLRIKFEVKFPTKLTTEQRAGLKRALGG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00056 328 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4527g00056 328 Gene3D DnaJ domain 3 109 IPR036869 -
Gabi4527g00056 328 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4527g00056 328 Gene3D - 152 230 - -
Gabi4527g00056 328 SUPERFAMILY Chaperone J-domain 3 110 IPR036869 -
Gabi4527g00056 328 CDD DnaJ 4 59 IPR001623 -
Gabi4527g00056 328 Pfam DnaJ C terminal domain 153 311 IPR002939 -
Gabi4527g00056 328 SMART dnaj_3 3 62 IPR001623 -
Gabi4527g00056 328 MobiDBLite consensus disorder prediction 62 78 - -
Gabi4527g00056 328 CDD DnaJ_C 153 314 - -
Gabi4527g00056 328 Gene3D - 231 327 - -
Gabi4527g00056 328 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 326 - -
Gabi4527g00056 328 FunFam DnaJ subfamily B member 13 232 312 - -
Gabi4527g00056 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 234 320 IPR008971 GO:0006457|GO:0051082
Gabi4527g00056 328 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4527g00056 328 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4527g00056 328 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4527g00056 328 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4527g00056 328 MobiDBLite consensus disorder prediction 61 90 - -
Gabi4527g00056 328 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4527g00056 328 FunFam Dnaj homolog subfamily b member 149 230 - -
Gabi4527g00056 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 153 233 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00056 Gabi-Chr4527 534275 536492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00056 5 67 C2H2 Transcription Factor Family AT1G74250 37.313 1.55e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00056 K09510 - gmx:100796426 545.428