Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00049 ATGCACATCAAATCGGCGCAGTCATCATTTCGGGATCGGTCGCAGGAATTCCAGAGCATTGCGGAGAGGTTGAAGAAGTCAGGATCTGGGCCCAATGGGCCTAGCAGTAGTGGTGCTAGTTCTTCCAGATCGGAGGAACAACGATCTGCTGTTGCAATTCAATCAGAATTCAATAGGAGGGCTTCCAAGATTGGCTACGGGATTCACCAAACGTCTCAGAAGCTCGCTAAGCTCGCCAAGTTGGCTAAAAGAACTTCGGTTTTTGACGATCCCACCATGGAAATCCAAGAGCTTACGGGTGTTATTAAGCAAGATATTACTGCTCTGAACTCTGCTGTTGTGGATCTTCAGTTACTCTGCAACTCTACAAATGAGAGTGGAAACGCTTCTACCGACACAACTAGCCATTCAACCACGGTTGTGGATGACCTAAAGACCCGATTGATGAGCACCACAAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTACATGACAATAGAAGACAATTGTTTTCGTCCTCTGCCTCTAAGGAATCTGCAAATCCCTTCGTCCGTCAACGTCCTTTGGCTACAAGGTCGGCTGCTACTGCTTCTAATGCCCCCGCACCACCCCCATGGGCTAGTGGGTCACCATCTTCATCTCAGTTGCTTCCTAAGAAGCAGGTGGACGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCTGCAGCAGCAGCAGATGGTTCCATTGCAAGATAATTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAGCTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATTCATTGGCAAATGTAGAGGGGGCACAAGGGGCTCTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTAATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1029 0.4558 MHIKSAQSSFRDRSQEFQSIAERLKKSGSGPNGPSSSGASSSRSEEQRSAVAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSTNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHDNRRQLFSSSASKESANPFVRQRPLATRSAATASNAPAPPPWASGSPSSSQLLPKKQVDGESQPLLQQQQLQQQQMVPLQDNYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDSLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00049 342 MobiDBLite consensus disorder prediction 214 240 - -
Gabi4527g00049 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Gabi4527g00049 342 MobiDBLite consensus disorder prediction 170 189 - -
Gabi4527g00049 342 SMART tSNARE_6 245 312 IPR000727 -
Gabi4527g00049 342 CDD SNARE_syntaxin5 253 331 - -
Gabi4527g00049 342 MobiDBLite consensus disorder prediction 1 51 - -
Gabi4527g00049 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Gabi4527g00049 342 Pfam SNARE domain 286 338 IPR000727 -
Gabi4527g00049 342 PANTHER SYNTAXIN 53 334 IPR045242 -
Gabi4527g00049 342 MobiDBLite consensus disorder prediction 172 186 - -
Gabi4527g00049 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi4527g00049 342 MobiDBLite consensus disorder prediction 196 240 - -
Gabi4527g00049 342 Gene3D - 51 305 - -
Gabi4527g00049 342 SUPERFAMILY t-snare proteins 55 305 IPR010989 GO:0016020|GO:0016192
Gabi4527g00049 342 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00049 Gabi-Chr4527 469573 473216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00049 1 342 SNARE and Associated Proteins AT3G24350 65.110 1.85e-147 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00049 K08490 - gmx:100777961 455.677