Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00048 ATGATAAATATTCATATACTAATCCTAATACTACAACTCAGTGAGTTTAAAGATGTTCTCACCATGCGAATTGAAAACTTGAAAGTACGTGATAATAGAAGACAATTGTTTTCGTCTTCTGCCTCTAAGGAATCTGTAAATCCCTTCGTACGTCAACGTCCTCTGGCAACAAAATTCGCTGCTGCTACTTCTAATGCCCCTGCACCACCCCCAGGGGCTAGTGGGTCTCCATCTTCATCTCAGTTGTTTCCTAAGAAGGGTGTGGATGGAGAGAGTCAACCATTGCTGCAACAACAGCAACAACAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATATTGAGTCCACTGTTCATGAGTTCAGCAACATTTTTAATCAAGTAGCAACACTTGTTTCGCAACAAGGAGAGATTGCCATCAGGATCGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATAAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCTTAA 603 0.4013 MINIHILILILQLSEFKDVLTMRIENLKVRDNRRQLFSSSASKESVNPFVRQRPLATKFAAATSNAPAPPPGASGSPSSSQLFPKKGVDGESQPLLQQQQQQVVPLQDSYMQSRAEALQNIESTVHEFSNIFNQVATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00048 200 PANTHER SYNTAXIN 41 192 IPR045242 -
Gabi4527g00048 200 MobiDBLite consensus disorder prediction 75 91 - -
Gabi4527g00048 200 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 108 170 IPR000727 -
Gabi4527g00048 200 SMART tSNARE_6 103 170 IPR000727 -
Gabi4527g00048 200 Pfam SNARE domain 144 196 IPR000727 -
Gabi4527g00048 200 MobiDBLite consensus disorder prediction 62 91 - -
Gabi4527g00048 200 SUPERFAMILY t-snare proteins 12 163 IPR010989 GO:0016020|GO:0016192
Gabi4527g00048 200 CDD SNARE_syntaxin5 111 189 - -
Gabi4527g00048 200 Gene3D - 9 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00048 Gabi-Chr4527 466102 469044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00048 15 200 SNARE and Associated Proteins AT3G24350 71.649 5.80e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00048 K08490 - gmx:100778493 239.965