Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00047 ATGAACTTCAAATCGACGCAGTCATCATTTCGGGATCGGACGCAGGAATTCCAGAGCATTGCGGAGAGGTTGAAGAAATCAGGGTCAGGGCCCAATGGGCCTAGCAGCAGGAGTAATAGTAGTTCTTCCAGATTTGAGGAACAGCGATTTGCTGTTGCAATTCAATCAGAGTTCAATAAGAGGGCTTCCAAGATTGGCTATGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCTAAAAGGACTTCGGTTTTTGACGATCCCACCATGGAAATCCAAGAGCTTACGGGTGTTATTAAGCAAGATATTACTGCTCTGAACTCTGCTGTTGTGGATCTTCAGTTACTTTGCAACTCTACAAATGAGAGTGGGAACGCTTCTACTGACACAACTAGCCATTCAACCACGGTTGTGGATGACCTAAAGACCCGATTGATGAGCACCACGAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTACATGACAATAGAAGACAATTGTTTTCGTCTTCTGCCTCTAAGGAATCTGCAAATCCCTTCGTACGTCAACGTCCTTTGGCAATAAAGTCGGCTGCTGCTACTTCTAATGCCCCTGCACCACCCCCATGGGCTAGTGGGTCTCCATCTTCATCTCAGTTGTTTCCTAAGAAGGATGTGGATGGAGAGAGTCAACAGTTGCTGCAACAACAGCAACAACAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAGGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCACAACAAGGAGAGATTGCCATCAGGATCGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCTTAG 1023 0.4409 MNFKSTQSSFRDRTQEFQSIAERLKKSGSGPNGPSSRSNSSSSRFEEQRFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSTNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHDNRRQLFSSSASKESANPFVRQRPLAIKSAAATSNAPAPPPWASGSPSSSQLFPKKDVDGESQQLLQQQQQQVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00047 340 MobiDBLite consensus disorder prediction 1 15 - -
Gabi4527g00047 340 MobiDBLite consensus disorder prediction 29 45 - -
Gabi4527g00047 340 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Gabi4527g00047 340 SMART tSNARE_6 243 310 IPR000727 -
Gabi4527g00047 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi4527g00047 340 SUPERFAMILY t-snare proteins 56 303 IPR010989 GO:0016020|GO:0016192
Gabi4527g00047 340 Gene3D - 51 303 - -
Gabi4527g00047 340 PANTHER SYNTAXIN 56 332 IPR045242 -
Gabi4527g00047 340 Pfam SNARE domain 284 336 IPR000727 -
Gabi4527g00047 340 CDD SNARE_syntaxin5 251 329 - -
Gabi4527g00047 340 MobiDBLite consensus disorder prediction 1 45 - -
Gabi4527g00047 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
Gabi4527g00047 340 MobiDBLite consensus disorder prediction 201 231 - -
Gabi4527g00047 340 MobiDBLite consensus disorder prediction 215 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00047 Gabi-Chr4527 451619 457585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00047 1 340 SNARE and Associated Proteins AT3G24350 64.402 4.22e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00047 K08490 - gmx:100811494 464.922