Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00046 ATGGCTAAATTCAATAAGAGGGCTTCCAAGATTGGCTATGGGATTCACCAAACGTCTCAGAAGCTCGCTAAGCTCGCGAAGTTGGCTAAAAGGACTTCGGTTTTTGACGACCCCACCATGAAAATCCAAGAGCTTACCAGTGTTATTAAGCAAGATATTACTGCTCTAAACTCTACTGTTGTGGATCTTCAGTTACTTTGCAACTCTACAAATGAGAGTGGGAACGCTTCTACAGACACAACTAGCCATTCAACCACGGATGTGGATGACCTAAAGACCCGATTAATGAACACCACCAAAGAGTTTAAAGATGTTCTCACCATGCGAACCGAGAACTTGAAGGTACACGACAATAGAAGACAATTGTTTTCGTCCTCTGCCTCTAAGGAATCTGCAAATCCCTTCGTCCGTCAACATCCTTTGGCAACAAAGTCGGCTGCTGCTACATCTAATGCCCCTGCACCACCATGGGCTAGTGGGTCTCCATCTTCATCTCAGTTGTTTCCTAAGAAGGATCTGGATGGAGAGAGTCAACCGTTGCTGCAACAACAGCAACAGCAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAGGCTCTTAGGAATGTTGAGTCCACTATTCATGAGCTAAGCAACATCTTTAATCAGCTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGGTGATACATTGGCAAAGGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCTTAG 858 0.4336 MAKFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMKIQELTSVIKQDITALNSTVVDLQLLCNSTNESGNASTDTTSHSTTDVDDLKTRLMNTTKEFKDVLTMRTENLKVHDNRRQLFSSSASKESANPFVRQHPLATKSAAATSNAPAPPWASGSPSSSQLFPKKDLDGESQPLLQQQQQQVVPLQDSYMQSRAEALRNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMGDTLAKVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00046 285 PANTHER SYNTAXIN 9 277 IPR045242 -
Gabi4527g00046 285 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 193 255 IPR000727 -
Gabi4527g00046 285 ProSitePatterns Syntaxin / epimorphin family signature. 199 238 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi4527g00046 285 SMART tSNARE_6 188 255 IPR000727 -
Gabi4527g00046 285 CDD SNARE_syntaxin5 196 274 - -
Gabi4527g00046 285 Pfam SNARE domain 229 281 IPR000727 -
Gabi4527g00046 285 SUPERFAMILY t-snare proteins 3 248 IPR010989 GO:0016020|GO:0016192
Gabi4527g00046 285 Gene3D - 1 248 - -
Gabi4527g00046 285 MobiDBLite consensus disorder prediction 144 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00046 Gabi-Chr4527 428155 439734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00046 2 285 SNARE and Associated Proteins AT3G24350 69.156 3.01e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00046 K08490 - gmx:100811494 407.527