Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00039 ATGGGAGAGGTGGTAGTAATGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATGAAGCATATGACTGAGAAAGATGTGTATAACCTACCATCAAATGAAGAGCACATGCTTGGAGAAGAGTCAAGGCAATCAACAGATCACAAAAATATCAATGACTTGCAAGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGCATTAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGATCAGAAGCTTAGACACGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGTGTCAACTGTGGTGTTTGTATGGGCAAGTATTTCTGTGAGATATGTAAGCTCTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATCTGCAGAACTGGAGGATGCGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCCATGAATGATGTCATTGTTTTGCCCTGTGGACATACAATCCATGAGAGCTGCCTGAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTGTGCTCGAAGTCAGTTTGTGATATGTCAAAAATTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCCATGCCAGAACCTTATCAGAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCACGTTCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGA 930 0.4237 MGEVVVMHSEPLQFECNDMKHMTEKDVYNLPSNEEHMLGEESRQSTDHKNINDLQERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNNINIDQKLRHDIPRHQVKQVICSLCGTEQEVQQNCVNCGVCMGKYFCEICKLFDDDISKQQYHCSGCGICRTGGCENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESMNDVIVLPCGHTIHESCLKEMREHFQYACPLCSKSVCDMSKIWEKFDLEIAATPMPEPYQNKMVWILCNDCGKTSHVQFHLVAQKCLNCKSYNTRQTRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00039 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Gabi4527g00039 309 Gene3D - 271 309 - -
Gabi4527g00039 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Gabi4527g00039 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Gabi4527g00039 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Gabi4527g00039 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Gabi4527g00039 309 CDD RING-H2_Pirh2-like 199 243 - -
Gabi4527g00039 309 SUPERFAMILY RING/U-box 199 248 - -
Gabi4527g00039 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Gabi4527g00039 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 37 308 - -
Gabi4527g00039 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Gabi4527g00039 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Gabi4527g00039 309 Pfam Ring finger domain 199 242 IPR001841 -
Gabi4527g00039 309 SMART ring_2 200 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00039 Gabi-Chr4527 386985 393500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00039 62 305 C2H2 Transcription Factor Family AT3G18290 40.400 2.19e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00039 K10144 - gmx:100812023 635.95