Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00031 ATGCTGATGTTAGGAGGGTGCCTGATTCTAAGAAGACTCTTGCCAGGACCACTTCTGAGGCTTATGCTTTCGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGTATTGGAAGTAAAGATATTTCTGATCTTGTCTGGAAAGCAGTCCGAGCTGCTGAAGCAGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTCAAAGCAGCTGGCGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTCGGAGTTTATTTTGCATATATATTCAGGAATATGAATCCACCAATGATGAAGCAGCAGCTGTTTTGGCTGCTTCAAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAACTCTGCCTGCATCAATACTGAGGCAGAGAATGTGAGTGGCAGCGAAACAGAATCTGGTGAGGGTGTTGAATATTACTACATTCCAGACATTCAATCACTTGCACGGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGGGTAGATGTGTGTCTTTCACTTCTGCAGCAGAATTCTAAACATCGGGAGGCATCCGAGGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATTTGTGCTTTGGCGGCACATAGGAAATTCGCTGCTTTATTTGTGGACCGTGGAGGAATGCAAAAGCTGCTCGCTGTCCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCCGTCAGATGTTGTTTATCATGTGGTTGAGCTGGCTCTCCAACTCCTTGAGTGCAACCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTTTTTCGAGCAGTTCTTGATGCTTTTGATTCCCAGGATGGATTACAGAAATTGCTGGGCCTTCTAAATGATGCTGCTTCGGTAAGGTCTGGAGTAAATTCTGGTGCCTTGGGTTTATCTAACTCAGCATCACTTCGAAATGATAGATCATCAGCAGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTACCACACTTGTGTTGCTTTGCGGCAATATTTCAGAGCACATCTCCTTTTATTAATGGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCGCTGGATATTAGTAATGAGGCAATGGATGCAGTATTCCTACAATTACAAAAAGATCGGAAGCTAGGTCCTGCATTTGTGAGAGCACGTTGGCCACCAGTTGAGAAGTTCTTGTCATCTAATGGGCATATTATTATGTTGGAGTTGTGTCAGGCCCCACCCGTGGAGCGATATCTGCATGATCTGCTTCAGTATGCATTGGGTGTTCTCCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATTGTAAATGCAACATTAAGCAATAATCGTGTTGGTATAGCGGTAATTCTGGATGCAGCAAATATTGCTAGTAATCATGTGGACCCTGAGATAATTCAGCCGGCATTAAATGTTTTAGTCAACCTTGTCTGCCCTCCTCCTTCAATCAGCAATAAACCACCTGTAGTTACACAAGGTCAGCAGTTTGCTTCTTCCCAAACCTTAAATGGTCCTCCCTCAGAGACTAAAGATAGAACTGCCGAACGTAATATCTCAGATCGAGCTGCTCACATTACCAGCCAGATTGATCCTAGGGAGAGGAATGGGGAGTCCAGTGCTGTAGATCGAGGCAGTGCTGCAGTACTTAGTACACAATCTGTTAATAGCAATCTGCAAACTCCTGTTCCCGCTGCAACTTCAGGATTGGTTGGCGACCGAAGAATATCCCTGGGTGCAGGAGCTGGTTGTGCTGGACTCGCAGCACAACTGGAACAAGGATATCGTCAAGCAAGAGAGGCTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCATCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGATTGGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCAGGCAGCCAGACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCAGGGCGTGCTAGTACATTAGCTGCTACTGATGCAGCTACTCCTACATTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATTACTTATCATTCAAGGGAACTCTTGCTCCTGATTCATGAACACCTACAGGCATCTGGGTTGACACAAACTGCTTCTGCGTTGCTTAAAGAGGCTCAGCTGACTCCTTTACCATCATTGGTTGCTCCGTCTTCTCTTGCACAACAGCCCACCACACAGGAAGCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTGTGGATTTCTCACTAACAAATTAAAGTTTAATGCAAAGGATGAGGATGCCGGCTTGAAAAGTGATGCTGTCTCTGCAAAGAAAAAATCACTGGCTTTCTCATCATCTTTTGGTTCACATTCAAGGCATCAAACTGTTGAGACTCAGCAGTCATCAGTCAGAAAATGGTTAAATTCTGGTAAAGAGTCTTCAGAAACAAGTATAGTAGAGTCTCTATCCGAGTCTTCAGTGAAACATAACATTGATGCTGGATCTGTGTGTAAGACTCCGATGCTATTGCCAACAAAACGAAAGTCATCTGATTTAAAGGATATAGTAATGTTTTCATCATCTGGAAAGCGACAAAATGTTGGGGATCAAGGACTTCGCACTCCTATTTGTTCAAGTGCAAGTCGTAAAAGCAGCCTGCAAACTGATGCTGTTGGGCTTTATTCACCAACCTGTAACCTGAGAAGTCAACAAGGCCGCTGTACAGCTGACTATGGGGATGACAATCAGTGTACTACCTCAAATCCAGGTCAGATATCCTCCCAAGTATTAAATGACCTTCAGTCCAACAATCCTGAGCGTGTATCATTAGATTCTCTAGTTGTTCAGTATTTGAAGCATCAGCATCGCCAATGCCCAGCTCCCATTACCACTCTTCCTCCGCTATCCCTTCTACACCCGCATGTTTGTCCTGAACCTAAGCGAAGCCTTGATGCCCCGTCAAATGTGACAGCTCGGCTTGGGACACGTGAATTTAAATTTATATATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTACAGCCGGTTTAGGCCATGGCGCACTTGTCGAGACGATGCTGGTGCCTTATTAACATGCATTACATTTGTTGGTGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGAGAGCTTAAATTTTTTGACTCCAACAACAACAATGTGGTGGAGAGCTTCACAGGTCACCAGTATCCTTTGACACTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCTTCAAGCTGCCAAGATGTTAGGCTCTGGGATGCAACATCGATTTTAGGTGGTCCTAGCCATTCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCAATTCTGGGAACATTTTTGCTGCCTTGTCATCAGAATCTGCACGACGGGAAATACTTTTGTATGATGTCCAAAAATGTCAGTTAGAGTCAAAGTTGTCAGATACATTTGCAACTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCACTTTAGCCCATCTGACTCGATGCTGCTTTGGAATGGTGTCTTATGGGATCGCCGGGGCTCTGGGCCTGTTCATCGCTTTGATCAGTTCACGGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTGTAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGCTACGTAGTGTACCTTCATTAGATCAAACAGCCATAACATTCAATGCACGTGGTGATGTTATATATGCAATCTTAAGGAGAAATCTTGAGGATGTGATGTCAGCCGTCCACACACGTCGAGCCAAGCATCCTCTCTTTGCAGCTTTCCGCACAGTGGATGCAATCAATTATTCTGACATTGCTACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCAACAGATTCATTTGTTGGGTTGATTACTATGGATGATCAAGAAGAGATGTATGCATCAGCCAGAATTTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAAGAAGACGAGGATGACGATGATGCTGATGTAGATCCTCTTTTAGGTCCTGGTCTTGGTGGCGAAAGTGGGAGTGATGCTGATGATATGAGCAATGATGACGACGATGATGATAGTGTAAGTGACCCCGATGATGATGAAGATGGAGATTTCATTTTAGATGATGCAGACTTTGATGGGGGAACTGGCTTATTGGAGATTGTGACAGGTGATGAGGATGATGATGACAGTCAACTACTTGAATCTTTAAGTAGTGACGAAGAGGGTTTTGTGGGTAATGGCTTTGGTTATTAA 4656 0.4467 MLMLGGCLILRRLLPGPLLRLMLSKERIMMIVSKSAVLEVKIFLILSGKQSELLKQKLDQPMHLKKLSKQLAMLLLTLLKLQLRSLFCIYIQEYESTNDEAAAVLAASRAASTVIDAASAVEVSRNSACINTEAENVSGSETESGEGVEYYYIPDIQSLARLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLSLLQQNSKHREASEVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVVYHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRSGVNSGALGLSNSASLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLMDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRARWPPVEKFLSSNGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPPVVTQGQQFASSQTLNGPPSETKDRTAERNISDRAAHITSQIDPRERNGESSAVDRGSAAVLSTQSVNSNLQTPVPAATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSSPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTQTASALLKEAQLTPLPSLVAPSSLAQQPTTQEASTQIQWPSGRTPCGFLTNKLKFNAKDEDAGLKSDAVSAKKKSLAFSSSFGSHSRHQTVETQQSSVRKWLNSGKESSETSIVESLSESSVKHNIDAGSVCKTPMLLPTKRKSSDLKDIVMFSSSGKRQNVGDQGLRTPICSSASRKSSLQTDAVGLYSPTCNLRSQQGRCTADYGDDNQCTTSNPGQISSQVLNDLQSNNPERVSLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKFIYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNNNVVESFTGHQYPLTLVQSFVSGETQLLLSSSCQDVRLWDATSILGGPSHSFEGCKAARFSNSGNIFAALSSESARREILLYDVQKCQLESKLSDTFATSTGRGHVYSLIHFSPSDSMLLWNGVLWDRRGSGPVHRFDQFTDYGGGGFHPAGNEVIVNSEVWDLRKFRLLRSVPSLDQTAITFNARGDVIYAILRRNLEDVMSAVHTRRAKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQEEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDADVDPLLGPGLGGESGSDADDMSNDDDDDDSVSDPDDDEDGDFILDDADFDGGTGLLEIVTGDEDDDDSQLLESLSSDEEGFVGNGFGY 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00031 1551 SMART WD40_4 1211 1249 IPR001680 GO:0005515
Gabi4527g00031 1551 SMART WD40_4 1166 1206 IPR001680 GO:0005515
Gabi4527g00031 1551 SMART WD40_4 1123 1163 IPR001680 GO:0005515
Gabi4527g00031 1551 SUPERFAMILY ARM repeat 174 732 IPR016024 -
Gabi4527g00031 1551 SMART Lish 792 824 IPR006594 GO:0005515
Gabi4527g00031 1551 MobiDBLite consensus disorder prediction 1481 1509 - -
Gabi4527g00031 1551 MobiDBLite consensus disorder prediction 1522 1536 - -
Gabi4527g00031 1551 PANTHER VPRBP PROTEIN-RELATED 93 1545 IPR033270 GO:0016567
Gabi4527g00031 1551 Coils Coil 64 84 - -
Gabi4527g00031 1551 MobiDBLite consensus disorder prediction 1447 1466 - -
Gabi4527g00031 1551 FunFam DDB1-and CUL4-associated factor homolog 1 1121 1448 - -
Gabi4527g00031 1551 SUPERFAMILY WD40 repeat-like 1137 1360 IPR036322 GO:0005515
Gabi4527g00031 1551 MobiDBLite consensus disorder prediction 1433 1551 - -
Gabi4527g00031 1551 Gene3D - 1124 1448 IPR015943 GO:0005515
Gabi4527g00031 1551 ProSiteProfiles LIS1 homology (LisH) motif profile. 792 824 IPR006594 GO:0005515
Gabi4527g00031 1551 MobiDBLite consensus disorder prediction 560 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00031 Gabi-Chr4527 259308 266232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00031 1150 1356 U-box Gene Family AT2G33340 24.554 3.08e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00031 K11789 - gmx:100800133 2237.61