LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4527g00030	ATGGAGGATCAAGGGAATCAAAGCCAAGCTCCACCGCGACGCGATGAAGCGGAGGCTCCTAAGAACGAAGAAGAAGTGTTGATTGAAAATGTTAACAAGCTCATGGGATATATTACTTCGGCCCCTGATAACCCTAAACCCACCGTCCTCCATGCCCTTGCCTCTCTTCTCGAAACCCAAGAGTTACGATATATGGAAGAAAATGGTCATTATTCCTCCAGTAATGCCCGTGCTGCCCATAACATTGGCCGTCTTGGGGGTGTAATCCGGGAAAACGATGAGTTCTTTGAGTTAATATCTTCAAAGTTTCTGTCGGAAACTAGATACTCTACTTCTGTTCAAGCTGCTGCTTGCAGACTTCTCCTATGCTGTTCCCTGACTTGGATTTATCCTCATGTTTTTGAAGAATCCGTCATGGAAAACTTCAAAGATTGGGCGATGGATGATAACGCGAAAATGTCTGCTGAAGAGCAAAATCTGAAGCATACTCCAGGCACAAGAGAGGCCACAGATTCCGAGATGTTGAAAACCTATTCTACTGGACTCCTTGCCGTGTGTTTGGTCGGCGGAGGTAAACTAGTGGAAGATGTATTGACATCAGGCTTGTCAGCTAAGCTTATGCGTTATCTTCGTTTGCGTGTGCTGGGAGAGACAAGTAGCAACCAGAAAGATATTATTCATTTAACAGAGAGTAGGCATGCATCTGGGAATGCTTCAGTGAGGGGTAGAGATGATGGTCGTGGCAGATTTCGCCAGCTCCTTGAATCAAGTCATTTAGATGATACAAGGATGATTGATGAGAGGTCCTTAGATGACCTAACTCTTAACTGGGGTCCAGATAGAAGCATTACTGGACAAACTTGCCAAGAAGATTCTTGGATAGATGGTGAACCACCTGATGGGCTAGGTGAAGGTGTTGATATCTGTGATGTAGATTCTGACGGGGAGGATAGATGGCGCTCTAGAGATATTCGTGATGGAAGGATAAAATATGGTGAGCATGACGACAATGCTAGAGGTGACTCTCCAAGGCGGCGTTCGAACCGTGGATGGGGAAGATCCAGAGGGAAAGGAAGGGTCAATGAAGGGAATGTAGAAAGTGAACCCATTTTGTCATCTCCAGGTTCTGGTAGTCGATTAGGACAAGGGCGGAGTGTCAGAGATAGGAGCATATTAAGAAATGCTGATGTTAGGAGGGTGCCTGATTCTAAGAAGACTCTTGCCAGGACCACTTCTGAGGCTTATGCTTTCGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGTATTGGAAGTAAAGATATTTCTGATCTTGTCTGGAAAGCAGTCCGAGCTGCTGAAGCAGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTCAAAGCAGCTGGCGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTCGGAGGAATATGAATCCACCAATGATGAAGCAGCAGCTGTTTTGGCTGCTTCAAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAACTCTGCCTGCATCAATACTGAGGCAGAGAATGGTGTTGAATATTACTACATTCCAGACATTCAATCACTTGCACGGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGGGTAGATGTGTGTCTTTCACTTCTGCAGCAGAATTCTAAACATCGGGAGGCATCCGAGGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATTTGTGCTTTGGCGGCACATAGGAAATTCGCTGCTTTATTTGTGGACCGTGGAGGAATGCAAAAGCTGCTCGCTGTCCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCCGTCAGATGTTGTTTATCATGTGGTTGAGCTGGCTCTCCAACTCCTTGAGTGCAACCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTTTTTCGAGCAGTTCTTGATGCTTTTGATTCCCAGGATGGATTACAGAAATTGCTGGGCCTTCTAAATGATGCTGCTTCGGTAAGGTCTGGAGTAAATTCTGGTGCCTTGGGTTTATCTAACTCAGCATCACTTCGAAATGATAGATCATCAGCAGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTACCACACTTGTGTTGCTTTGCGGCAATATTTCAGAGCACATCTCCTTTTATTAATGGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCGCTGGATATTAGTAATGAGGCAATGGATGCAGTATTCCTACAATTACAAAAAGATCGGAAGCTAGGTCCTGCATTTGTGAGAGCACGTTGGCCACCAGTTGAGAAGTTCTTGTCATCTAATGGGCATATTATTATGTTGGAGTTGTGTCAGGCCCCACCCGTGGAGCGATATCTGCATGATCTGCTTCAGTATGCATTGGGTGTTCTCCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATTGTAAATGCAACATTAAGCAATAATCGTGTTGGTATAGCGGTAATTCTGGATGCAGCAAATATTGCTAGTAATCATGTGGACCCTGAGATAATTCAGCCGGCATTAAATGTTTTAGTCAACCTTGTCTGCCCTCCTCCTTCAATCAGCAATAAACCACCTGTAGTTACACAAGGTCAGCAGTTTGCTTCTTCCCAAACCTTAAATGGTCCTCCCTCAGAGACTAAAGTTAGTACACAATCTGTTAATAGCAATCTGCAAACTCCTGTTCCCGCTGCAACTTCAGGATTGGTTGGCGACCGAAGAATATCCCTGGGTGCAGGAGCTGGTTGTGCTGGACTCGCAGCACAACTGGAACAAGGATATCGTCAAGCAAGAGAGGCTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCATCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGATTGGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCAGGCAGCCAGACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCAGGGCGTGCTAGTACATTAGCTGCTACTGATGCAGCTACTCCTACATTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATTACTTATCATTCAAGGGAACTCTTGCTCCTGATTCATGAACACCTACAGGCATCTGGGTTGACACAAACTGCTTCTGCGTTGCTTAAAGAGGCTCAGCTGACTCCTTTACCATCATTGGTTGCTCCGTCTTCTCTTGCACAACAGCCCACCACACAGGAAGCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTGTGGATTTCTCACTAACAAATTAAAGTTTAATGCAAAGGATGAGGATGCCGGCTTGAAAAGTGATGCTGTCTCTGCAAAGAAAAAATCACTGGCTTTCTCATCATCTTTTGGTTCACATTCAAGGCATCAAACTGTTGAGACTCAGCAGTCATCAGTCAGAAAATGGTTAAATTCTGGTAAAGAGTCTTCAGAAACAAGTATAGTAGAGTCTCTATCCGAGTCTTCAGTGAAACATAACATTGATGCTGGATCTGTGTGTAAGACTCCGATGCTATTGCCAACAAAACGAAAGTCATCTGATTTAAAGGATATAGTAATGTTTTCATCATCTGGAAAGCGACAAAATGTTGGGGATCAAGGACTTCGCACTCCTATTTGTTCAAGTGCAAGTCGTAAAAGCAGCCTGCAAACTGATGCTGTTGGGCTTTATTCACCAACCTGTAACCTGAGAAGTCAACAAGGCCGCTGTACAGCTGACTATGGGGATGACAATCAGTGTACTACCTCAAATCCAGGTCAGATATCCTCCCAAGTATTAAATGACCTTCAGTCCAACAATCCTGAGCGTGTATCATTAGATTCTCTAGTTGTTCAGTATTTGAAGCATCAGCATCGCCAATGCCCAGCTCCCATTACCACTCTTCCTCCGCTATCCCTTCTACACCCGCATGTTTGTCCTGAACCTAAGCGAAGCCTTGATGCCCCGTCAAATGTGACAGCTCGGCTTGGGACACGTGAATTTAAATTTATATATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTACAGCCGGTTTAGGCCATGGCGCACTTGTCGAGACGATGCTGGTGCCTTATTAACATGCATTACATTTGTTGGTGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGAGAGCTTAAATTTTTTGACTCCAACAACAACAATGTGGTGGAGAGCTTCACAGGTCACCAGTATCCTTTGACACTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCTTCAAGCTGCCAAGATGTTAGGCTCTGGGATGCAACATCGATTTTAGGTGGTCCTAGCCATTCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCAATTCTGGGAACATTTTTGCTGCCTTGTCATCAGAATCTGCACGACGGGAAATACTTTTGTATGATGTCCAAAAATGTCAGTTAGAGTCAAAGTTGTCAGATACATTTGCAACTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCACTTTAGCCCATCTGACTCGATGCTGCTTTGGAATGGTGTCTTATGGGATCGCCGGGGCTCTGGGCCTGTTCATCGCTTTGATCAGTTCACGGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTGTAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGCTACGTAGTGTACCTTCATTAGATCAAACAGCCATAACATTCAATGCACGTGGTGATGTTATATATGCAATCTTAAGGAGAAATCTTGAGGATGTGATGTCAGCCGTCCACACACGTCGAGCCAAGCATCCTCTCTTTGCAGCTTTCCGCACAGTGGATGCAATCAATTATTCTGACATTGCTACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCAACAGATTCATTTGTTGGGTTGATTACTATGGATGATCAAGAAGAGATGTATGCATCAGCCAGAATTTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAAGAAGACGAGGATGACGATGATGCTGATGTAGATCCTCTTTTAGGTCCTGGTCTTGGTGGCGAAAGTGGGAGTGATGCTGATGATATGAGCAATGATGACGACGATGATGATAGTGTAAGTGACCCCGATGATGATGAAGATGGAGATTTCATTTTAGATGATGCAGACTTTGATGGGGGAACTGGCTTATTGGAGATTGTGACAGGTGATGAGGATGATGATGACAGTCAACTACTTGAATCTTTAAGTAGTGACGAAGAGGGTTTTGTGGGTAATGGCTTTGGTTATTAA	5670	0.4481	MEDQGNQSQAPPRRDEAEAPKNEEEVLIENVNKLMGYITSAPDNPKPTVLHALASLLETQELRYMEENGHYSSSNARAAHNIGRLGGVIRENDEFFELISSKFLSETRYSTSVQAAACRLLLCCSLTWIYPHVFEESVMENFKDWAMDDNAKMSAEEQNLKHTPGTREATDSEMLKTYSTGLLAVCLVGGGKLVEDVLTSGLSAKLMRYLRLRVLGETSSNQKDIIHLTESRHASGNASVRGRDDGRGRFRQLLESSHLDDTRMIDERSLDDLTLNWGPDRSITGQTCQEDSWIDGEPPDGLGEGVDICDVDSDGEDRWRSRDIRDGRIKYGEHDDNARGDSPRRRSNRGWGRSRGKGRVNEGNVESEPILSSPGSGSRLGQGRSVRDRSILRNADVRRVPDSKKTLARTTSEAYAFEREDNDDCFQECRIGSKDISDLVWKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYESTNDEAAAVLAASRAASTVIDAASAVEVSRNSACINTEAENGVEYYYIPDIQSLARLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLSLLQQNSKHREASEVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVVYHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRSGVNSGALGLSNSASLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLMDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRARWPPVEKFLSSNGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPPVVTQGQQFASSQTLNGPPSETKVSTQSVNSNLQTPVPAATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSSPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTQTASALLKEAQLTPLPSLVAPSSLAQQPTTQEASTQIQWPSGRTPCGFLTNKLKFNAKDEDAGLKSDAVSAKKKSLAFSSSFGSHSRHQTVETQQSSVRKWLNSGKESSETSIVESLSESSVKHNIDAGSVCKTPMLLPTKRKSSDLKDIVMFSSSGKRQNVGDQGLRTPICSSASRKSSLQTDAVGLYSPTCNLRSQQGRCTADYGDDNQCTTSNPGQISSQVLNDLQSNNPERVSLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKFIYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNNNVVESFTGHQYPLTLVQSFVSGETQLLLSSSCQDVRLWDATSILGGPSHSFEGCKAARFSNSGNIFAALSSESARREILLYDVQKCQLESKLSDTFATSTGRGHVYSLIHFSPSDSMLLWNGVLWDRRGSGPVHRFDQFTDYGGGGFHPAGNEVIVNSEVWDLRKFRLLRSVPSLDQTAITFNARGDVIYAILRRNLEDVMSAVHTRRAKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQEEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDADVDPLLGPGLGGESGSDADDMSNDDDDDDSVSDPDDDEDGDFILDDADFDGGTGLLEIVTGDEDDDDSQLLESLSSDEEGFVGNGFGY	1889

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	1	22	-	-
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	1819	1847	-	-
	Gabi4527g00030	1889	ProSiteProfiles	LIS1 homology (LisH) motif profile.	1130	1162	IPR006594	GO:0005515
	Gabi4527g00030	1889	FunFam	DDB1-and CUL4-associated factor homolog 1	1459	1786	-	-
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	1860	1874	-	-
	Gabi4527g00030	1889	Gene3D	-	1462	1786	IPR015943	GO:0005515
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	1785	1804	-	-
	Gabi4527g00030	1889	PANTHER	VPRBP PROTEIN-RELATED	18	1883	IPR033270	GO:0016567
	Gabi4527g00030	1889	SUPERFAMILY	ARM repeat	552	1070	IPR016024	-
	Gabi4527g00030	1889	SMART	Lish	1130	1162	IPR006594	GO:0005515
	Gabi4527g00030	1889	SUPERFAMILY	WD40 repeat-like	1475	1698	IPR036322	GO:0005515
	Gabi4527g00030	1889	SMART	WD40_4	1549	1587	IPR001680	GO:0005515
	Gabi4527g00030	1889	SMART	WD40_4	1461	1501	IPR001680	GO:0005515
	Gabi4527g00030	1889	SMART	WD40_4	1504	1544	IPR001680	GO:0005515
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	1771	1889	-	-
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	366	380	-	-
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	283	314	-	-
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	331	348	-	-
	Gabi4527g00030	1889	MobiDBLite	consensus disorder prediction	331	397	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4527g00030	Gabi-Chr4527	256536	266232	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4527g00030	1488	1694	U-box Gene Family	AT2G33340	24.554	5.23e-06	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4527g00030	K11789		-	gmx:100796030	2843.14