Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00029 ATGGAGGATCAAGGGAATCAAAGCCAAGCTCCACCGCGACGCGATGAAGCGGAGGCTCCTAAGAACGAAGAAGAAGTGTTGATTGAAAATGTTAACAAGCTCATGGGATATATTACTTCGGCCCCTGATAACCCTAAACCCACCGTCCTCCATGCCCTTGCCTCTCTTCTCGAAACCCAAGAGTTACGATATATGGAAGAAAATGGTCATTATTCCTCCAGTAATGCCCGTGCTGCCCATAACATTGGCCGTCTTGGGGGTGTAATCCGGGAAAACGATGAGTTCTTTGAGTTAATATCTTCAAAGTTTCTGTCGGAAACTAGATACTCTACTTCTGTTCAAGCTGCTGCTTGCAGACTTCTCCTATGCTGTTCCCTGACTTGGATTTATCCTCATGTTTTTGAAGAATCCGTCATGGAAAACTTCAAAGATTGGGCGATGGATGATAACGCGAAAATGTCTGCTGAAGAGCAAAATCTGAAGCATACTCCAGGCACAAGAGAGGCCACAGATTCCGAGATGTTGAAAACCTATTCTACTGGACTCCTTGCCGTGTGTTTGGTCGGCGGAGGTAAACTAGTGGAAGATGTATTGACATCAGGCTTGTCAGCTAAGCTTATGCGTTATCTTCGTTTGCGTGTGCTGGGAGAGACAAGTAGCAACCAGAAAGATATTATTCATTTAACAGAGAGTAGGCATGCATCTGGGAATGCTTCAGTGAGGGGTAGAGATGATGGTCGTGGCAGATTTCGCCAGCTCCTTGAATCAAGTCATTTAGATGATACAAGGATGATTGATGAGAGGTCCTTAGATGACCTAACTCTTAACTGGGGTCCAGATAGAAGCATTACTGGACAAACTTGCCAAGAAGATTCTTGGATAGATGGTGAACCACCTGATGGGCTAGGTGAAGGTGTTGATATCTGTGATGTAGATTCTGACGGGGAGGATAGATGGCGCTCTAGAGATATTCGTGATGGAAGGATAAAATATGGTGAGCATGACGACAATGCTAGAGGTGACTCTCCAAGGCGGCGTTCGAACCGTGGATGGGGAAGATCCAGAGGGAAAGGAAGGGTCAATGAAGGGAATGTAGAAAGTGAACCCATTTTGTCATCTCCAGGTTCTGGTAGTCGATTAGGACAAGGGCGGAGTGTCAGAGATAGGAGCATATTAAGAAATGCTGATGTTAGGAGGGTGCCTGATTCTAAGAAGACTCTTGCCAGGACCACTTCTGAGGCTTATGCTTTCGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGTATTGGAAGTAAAGATATTTCTGATCTTGTCTGGAAAGCAGTCCGAGCTGCTGAAGCAGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTCAAAGCAGCTGGCGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTCGGAGGAATATGAATCCACCAATGATGAAGCAGCAGCTGTTTTGGCTGCTTCAAGAGCTGCATCAACTGTTATTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAACTCTGCCTGCATCAATACTGAGGCAGAGAATGTGAGTGGCAGCGAAACAGAATCTGGTGAGGGTGTTGAATATTACTACATTCCAGACATTCAATCACTTGCACGGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGGGTAGATGTGTGTCTTTCACTTCTGCAGCAGAATTCTAAACATCGGGAGGCATCCGAGGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATTTGTGCTTTGGCGGCACATAGGAAATTCGCTGCTTTATTTGTGGACCGTGGAGGAATGCAAAAGCTGCTCGCTGTCCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCCGTCAGATGTTGTTTATCATGTGGTTGAGCTGGCTCTCCAACTCCTTGAGTGCAACCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTTTTTCGAGCAGTTCTTGATGCTTTTGATTCCCAGGATGGATTACAGAAATTGCTGGGCCTTCTAAATGATGCTGCTTCGGTAAGGTCTGGAGTAAATTCTGGTGCCTTGGGTTTATCTAACTCAGCATCACTTCGAAATGATAGATCATCAGCAGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTACCACACTTGTGTTGCTTTGCGGCAATATTTCAGAGCACATCTCCTTTTATTAATGGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCGCTGGATATTAGTAATGAGGCAATGGATGCAGTATTCCTACAATTACAAAAAGATCGGAAGCTAGGTCCTGCATTTGTGAGAGCACGTTGGCCACCAGTTGAGAAGTTCTTGTCATCTAATGGGCATATTATTATGTTGGAGTTGTGTCAGGCCCCACCCGTGGAGCGATATCTGCATGATCTGCTTCAGTATGCATTGGGTGTTCTCCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATTGTAAATGCAACATTAAGCAATAATCGTGTTGGTATAGCGGTAATTCTGGATGCAGCAAATATTGCTAGTAATCATGTGGACCCTGAGATAATTCAGCCGGCATTAAATGTTTTAGTCAACCTTGTCTGCCCTCCTCCTTCAATCAGCAATAAACCACCTGTAGTTACACAAGGTCAGCAGTTTGCTTCTTCCCAAACCTTAAATGGTCCTCCCTCAGAGACTAAAGATAGAACTGCCGAACGTAATATCTCAGATCGAGCTGCTCACATTACCAGCCAGATTGATCCTAGGGAGAGGAATGGGGAGTCCAGTGCTGTAGATCGAGGCAGTGCTGCAGTACTTAGTACACAATCTGTTAATAGCAATCTGCAAACTCCTGTTCCCGCTGCAACTTCAGGATTGGTTGGCGACCGAAGAATATCCCTGGGTGCAGGAGCTGGTTGTGCTGGACTCGCAGCACAACTGGAACAAGGATATCGTCAAGCAAGAGAGGCTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCATCTCCTGCTGCTCTGGACTGTCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGATTGGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCAGGCAGCCAGACACTTGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCAGGGCGTGCTAGTACATTAGCTGCTACTGATGCAGCTACTCCTACATTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATTACTTATCATTCAAGGGAACTCTTGCTCCTGATTCATGAACACCTACAGGCATCTGGGTTGACACAAACTGCTTCTGCGTTGCTTAAAGAGGCTCAGCTGACTCCTTTACCATCATTGGTTGCTCCGTCTTCTCTTGCACAACAGCCCACCACACAGGAAGCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTGTGGATTTCTCACTAACAAATTAAAGTTTAATGCAAAGGATGAGGATGCCGGCTTGAAAAGTGATGCTGTCTCTGCAAAGAAAAAATCACTGGCTTTCTCATCATCTTTTGGTTCACATTCAAGGCATCAAACTGTTGAGACTCAGCAGTCATCAGTCAGAAAATGGTTAAATTCTGGTAAAGAGTCTTCAGAAACAAGTATAGTAGAGTCTCTATCCGAGTCTTCAGTGAAACATAACATTGATGCTGGATCTGTGTGTAAGACTCCGATGCTATTGCCAACAAAACGAAAGTCATCTGATTTAAAGGATATAGTAATGTTTTCATCATCTGGAAAGCGACAAAATGTTGGGGATCAAGGACTTCGCACTCCTATTTGTTCAAGTGCAAGTCGTAAAAGCAGCCTGCAAACTGATGCTGTTGGGCTTTATTCACCAACCTGTAACCTGAGAAGTCAACAAGGCCGCTGTACAGCTGACTATGGGGATGACAATCAGTGTACTACCTCAAATCCAGGTCAGATATCCTCCCAAGTATTAAATGACCTTCAGTCCAACAATCCTGAGCGTGTATCATTAGATTCTCTAGTTGTTCAGTATTTGAAGCATCAGCATCGCCAATGCCCAGCTCCCATTACCACTCTTCCTCCGCTATCCCTTCTACACCCGCATGTTTGTCCTGAACCTAAGCGAAGCCTTGATGCCCCGTCAAATGTGACAGCTCGGCTTGGGACACGTGAATTTAAATTTATATATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTACAGCCGGTTTAGGCCATGGCGCACTTGTCGAGACGATGCTGGTGCCTTATTAACATGCATTACATTTGTTGGTGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGAGAGCTTAAATTTTTTGACTCCAACAACAACAATGTGGTGGAGAGCTTCACAGGTCACCAGTATCCTTTGACACTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCTTCAAGCTGCCAAGATGTTAGGCTCTGGGATGCAACATCGATTTTAGGTGGTCCTAGCCATTCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCAATTCTGGGAACATTTTTGCTGCCTTGTCATCAGAATCTGCACGACGGGAAATACTTTTGTATGATGTCCAAAAATGTCAGTTAGAGTCAAAGTTGTCAGATACATTTGCAACTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCACTTTAGCCCATCTGACTCGATGCTGCTTTGGAATGGTGTCTTATGGGATCGCCGGGGCTCTGGGCCTGTTCATCGCTTTGATCAGTTCACGGACTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTGTAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGACTGCTACGTAGTGTACCTTCATTAGATCAAACAGCCATAACATTCAATGCACGTGGTGATGTTATATATGCAATCTTAAGGAGAAATCTTGAGGATGTGATGTCAGCCGTCCACACACGTCGAGCCAAGCATCCTCTCTTTGCAGCTTTCCGCACAGTGGATGCAATCAATTATTCTGACATTGCTACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCAACAGATTCATTTGTTGGGTTGATTACTATGGATGATCAAGAAGAGATGTATGCATCAGCCAGAATTTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAAGAAGACGAGGATGACGATGATGCTGATGTAGATCCTCTTTTAGGTCCTGGTCTTGGTGGCGAAAGTGGGAGTGATGCTGATGATATGAGCAATGATGACGACGATGATGATAGTGTAAGTGACCCCGATGATGATGAAGATGGAGATTTCATTTTAGATGATGCAGACTTTGATGGGGGAACTGGCTTATTGGAGATTGTGACAGGTGATGAGGATGATGATGACAGTCAACTACTTGAATCTTTAAGTAGTGACGAAGAGGGTTTTGTGGGTAATGGCTTTGGTTATTAA 5814 0.4498 MEDQGNQSQAPPRRDEAEAPKNEEEVLIENVNKLMGYITSAPDNPKPTVLHALASLLETQELRYMEENGHYSSSNARAAHNIGRLGGVIRENDEFFELISSKFLSETRYSTSVQAAACRLLLCCSLTWIYPHVFEESVMENFKDWAMDDNAKMSAEEQNLKHTPGTREATDSEMLKTYSTGLLAVCLVGGGKLVEDVLTSGLSAKLMRYLRLRVLGETSSNQKDIIHLTESRHASGNASVRGRDDGRGRFRQLLESSHLDDTRMIDERSLDDLTLNWGPDRSITGQTCQEDSWIDGEPPDGLGEGVDICDVDSDGEDRWRSRDIRDGRIKYGEHDDNARGDSPRRRSNRGWGRSRGKGRVNEGNVESEPILSSPGSGSRLGQGRSVRDRSILRNADVRRVPDSKKTLARTTSEAYAFEREDNDDCFQECRIGSKDISDLVWKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYESTNDEAAAVLAASRAASTVIDAASAVEVSRNSACINTEAENVSGSETESGEGVEYYYIPDIQSLARLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLSLLQQNSKHREASEVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVVYHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRSGVNSGALGLSNSASLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLLLMDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRARWPPVEKFLSSNGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPPVVTQGQQFASSQTLNGPPSETKDRTAERNISDRAAHITSQIDPRERNGESSAVDRGSAAVLSTQSVNSNLQTPVPAATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSSPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTQTASALLKEAQLTPLPSLVAPSSLAQQPTTQEASTQIQWPSGRTPCGFLTNKLKFNAKDEDAGLKSDAVSAKKKSLAFSSSFGSHSRHQTVETQQSSVRKWLNSGKESSETSIVESLSESSVKHNIDAGSVCKTPMLLPTKRKSSDLKDIVMFSSSGKRQNVGDQGLRTPICSSASRKSSLQTDAVGLYSPTCNLRSQQGRCTADYGDDNQCTTSNPGQISSQVLNDLQSNNPERVSLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKFIYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNNNVVESFTGHQYPLTLVQSFVSGETQLLLSSSCQDVRLWDATSILGGPSHSFEGCKAARFSNSGNIFAALSSESARREILLYDVQKCQLESKLSDTFATSTGRGHVYSLIHFSPSDSMLLWNGVLWDRRGSGPVHRFDQFTDYGGGGFHPAGNEVIVNSEVWDLRKFRLLRSVPSLDQTAITFNARGDVIYAILRRNLEDVMSAVHTRRAKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQEEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDADVDPLLGPGLGGESGSDADDMSNDDDDDDSVSDPDDDEDGDFILDDADFDGGTGLLEIVTGDEDDDDSQLLESLSSDEEGFVGNGFGY 1937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00029 1937 PANTHER VPRBP PROTEIN-RELATED 18 1931 IPR033270 GO:0016567
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4527g00029 1937 SUPERFAMILY WD40 repeat-like 1523 1746 IPR036322 GO:0005515
Gabi4527g00029 1937 FunFam DDB1-and CUL4-associated factor homolog 1 1507 1834 - -
Gabi4527g00029 1937 ProSiteProfiles LIS1 homology (LisH) motif profile. 1178 1210 IPR006594 GO:0005515
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 1867 1895 - -
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 1908 1922 - -
Gabi4527g00029 1937 SUPERFAMILY ARM repeat 562 1118 IPR016024 -
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 1833 1852 - -
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 946 996 - -
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 366 380 - -
Gabi4527g00029 1937 SMART Lish 1178 1210 IPR006594 GO:0005515
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 283 314 - -
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 1819 1937 - -
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 331 348 - -
Gabi4527g00029 1937 Gene3D - 1510 1834 IPR015943 GO:0005515
Gabi4527g00029 1937 SMART WD40_4 1552 1592 IPR001680 GO:0005515
Gabi4527g00029 1937 SMART WD40_4 1509 1549 IPR001680 GO:0005515
Gabi4527g00029 1937 SMART WD40_4 1597 1635 IPR001680 GO:0005515
Gabi4527g00029 1937 MobiDBLite consensus disorder prediction 331 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00029 Gabi-Chr4527 256536 266232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00029 1536 1742 U-box Gene Family AT2G33340 24.554 5.85e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00029 K11789 - gmx:100796030 2935.21