Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4527g00006 ATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTTCCTAAAAAGGGGATGGGCCATGTGTTTAGAGATACCGCTAATACTAGAGATCGAAATGGTCAAGTGTGCAGTCGCCTTGGTTGCAGTAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCAATCCGATCCTCTTCAAGTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACTTTCTCTGGGGCTAGTAACCCAGGAAAACCCCTTATAAAGCCCCGGAAAACAATATCGTCTCGGGTAGAGACTGATTCATCTGAATCTAGTAGTGTACAAGATGAACCAGAAGTTTCAAAGCTTGTCCCTCCACCTGATAAAACTCAGAGAGGGGGACTTCAAGCTGAAGTGGAAAATGCAGAGTCTAGTAATGTCATGCTGATGGAAGTAGGGAGCTCTAGTGTAGTATCTAATACAAGATCTCGGAGGAATTTTCATTCGAAGCCTGGATTACGTGGTCAAGAAATTAAAAACACTGGTCCAGTGACACGTGCAGGTGCCAGTAAGTATGGGTTAAGGAACCTCAGATGCAACTCTATTTCTGATGTCATCCCTGCTGATTGTTTACCATCAGATTCAACCCTTAACAAAAGGAAGGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGGAAAAAGATGAGTGGGTCTTCATTAGAAGGACGGAATTCTGGTTCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAATACTCCTCCTCACAGGGACAGGCCAGACAGCAACGTAGCGTCGGTTAGGACACGAAGACCAATAAGTGGTAATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCATGTGGCACCCAATGAGTCTTTTGTCATGATACCTTCTTTGCCTCATTCTAGTGATCTTCATGCTCCTGGTGTATCACATCATACATCTGTAGAGACTCCTTTAAGTCGTCTGAGCTCTTATAGTAGAGCAGGTACCGGCAGTGAGGAGTTATATGGTGTTATGCCTGTGTCTCCTGCAGACTATGGCATCACTCATTCTCTAATAAATCGGGATAGCTTTCGACGTCGCTACAACATGGATGGTATTACAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCTTTTACTGGAGTCGAACTTGTTCCTTACTGGACTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGAACTACTTGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAACACTTTCAGAATGTCTAAAGAGAAGTTTCTATCAATCCTCACCCTCAGACCATGCAGCTGAGAGTTGCAATGAGGATAACGATGATACCAAATGCAGCATCTGCCAGGAGGAATATGTGGCCACAGATGAAGTGGGGAGTCTGCAATGCGAACATATGTATCATGTGGTTTGCATACAACAATGGCTACGGCTAAAAAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCGTCAAATTCATCCTCATCTCATTAA 1638 0.4353 MDEYSGKRAIDGVVVPKKGMGHVFRDTANTRDRNGQVCSRLGCSSRVNSPKGAQIGSSEKGKSLRPSIRSSSSGKEAIGSSSRTFSGASNPGKPLIKPRKTISSRVETDSSESSSVQDEPEVSKLVPPPDKTQRGGLQAEVENAESSNVMLMEVGSSSVVSNTRSRRNFHSKPGLRGQEIKNTGPVTRAGASKYGLRNLRCNSISDVIPADCLPSDSTLNKRKDMIKKRNCEGESSSTARGKKMSGSSLEGRNSGSRNGISISDSRISRNTPPHRDRPDSNVASVRTRRPISGNARGRLSSQGNANHVAPNESFVMIPSLPHSSDLHAPGVSHHTSVETPLSRLSSYSRAGTGSEELYGVMPVSPADYGITHSLINRDSFRRRYNMDGITEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTALTEETLSECLKRSFYQSSPSDHAAESCNEDNDDTKCSICQEEYVATDEVGSLQCEHMYHVVCIQQWLRLKNWCPICKASVAPSNSSSSH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4527g00006 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 539 IPR013083 -
Gabi4527g00006 545 MobiDBLite consensus disorder prediction 30 89 - -
Gabi4527g00006 545 SMART ring_2 492 532 IPR001841 -
Gabi4527g00006 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 69 537 IPR045191 GO:0061630
Gabi4527g00006 545 MobiDBLite consensus disorder prediction 237 268 - -
Gabi4527g00006 545 Pfam Ring finger domain 491 533 IPR001841 -
Gabi4527g00006 545 SUPERFAMILY RING/U-box 486 538 - -
Gabi4527g00006 545 MobiDBLite consensus disorder prediction 269 283 - -
Gabi4527g00006 545 FunFam E3 ubiquitin-protein ligase arkadia 454 538 - -
Gabi4527g00006 545 ProSiteProfiles Zinc finger RING-type profile. 492 533 IPR001841 -
Gabi4527g00006 545 MobiDBLite consensus disorder prediction 157 186 - -
Gabi4527g00006 545 MobiDBLite consensus disorder prediction 223 306 - -
Gabi4527g00006 545 Coils Coil 396 416 - -
Gabi4527g00006 545 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4527g00006 Gabi-Chr4527 29672 35708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4527g00006 389 533 C3H Transcription Factor Family AT2G15530 44.138 3.67e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4527g00006 - - gmx:100787213 831.632