Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4525g00006 ATGGATGAGAGAAATGACATGGATAAGATGGATGATGTGATAATGCCTGGTTTTCGGTTTCACCCTACAGATGAGGAGCTTGTTGATTTTTACCTCAAGAGAAAAATTCAGCAGAAACCACTTGCTATTGAGTTGATAAAGCAAGTTGATATTTATAAATATGATCCATGGGACCTTCCAAAGCTGGTGAGTACTGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGAAACAGTGCACGCCCAAATCGAGTAACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATACTCCTCAGAAGGAAAATGCATTGGTTTGAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCAGCCAAAGGAATGAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTGTATACCAGACACTTCTCCCAAAAAACTCTCAGACAAAAGCCTCCCAGCAAGAGATTCATGGGCAATCTGTAGGATATTCAAGAAAACAAGTTCAATGTCCATGGCACAGAAGGCCTTATCTTACCCTTGGATCTCTCAGTTACCAGGAAGCATGGTATCTGATATGCTCACACAGAATATCTCTTGCACAAAAGAAGCAGGCTCATCAGCAATTCAATTTTGTGGTAACAATAAGGAGTTACACCAAGTCTCTAATGCCAACACCAACTTCTTAGCTTCAGATATTCCATCTTATAAACCTATCAATAGCAGCACAGTTTCCAAGTCCTCACAAATTCCTGTATCAGATGGAGACCTTGCTGACAACTTTATCTTCTACACCCTTGAAGCAACAGGGCCCACCAAGTGCACAGTTGATGCTAGTTCCATGCTTTCCAACCCTGACTATATAGGTTTTGAAGAGCCAAACCAGGAGTACAGTGGCTTCTCAATTAGTCTACCTCAGGATATGCAAGCAAACATGGGCATAGAGATAGGTGAAGAAGAACAAGGATGGAGGAAGAACCAAAATCAAGTGCAGTTTAACCAGTGGGACACAACTGGGAGAACTATTGATTTTCCATTCAGCTTGCCTCCAAATGATGCAGGCTACTGTAGCAGGGGATTCACCCCCTTGCCCCAGTGA 1110 0.4288 MDERNDMDKMDDVIMPGFRFHPTDEELVDFYLKRKIQQKPLAIELIKQVDIYKYDPWDLPKLVSTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCIPDTSPKKLSDKSLPARDSWAICRIFKKTSSMSMAQKALSYPWISQLPGSMVSDMLTQNISCTKEAGSSAIQFCGNNKELHQVSNANTNFLASDIPSYKPINSSTVSKSSQIPVSDGDLADNFIFYTLEATGPTKCTVDASSMLSNPDYIGFEEPNQEYSGFSISLPQDMQANMGIEIGEEEQGWRKNQNQVQFNQWDTTGRTIDFPFSLPPNDAGYCSRGFTPLPQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4525g00006 369 FunFam NAC domain-containing protein 35 23 173 - -
Gabi4525g00006 369 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Gabi4525g00006 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 235 - -
Gabi4525g00006 369 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Gabi4525g00006 369 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Gabi4525g00006 369 SUPERFAMILY NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4525g00006 Gabi-Chr4525 71577 73215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4525g00006 2 230 NAC Transcription Factor Family AT1G26870 63.071 1.33e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4525g00006 NAM 3.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4525g00006 - - gmx:100777630 518.85