Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4524g00002 ATGAATGATGGTAGACAAATGGGGGTGCATTACGTAGATGCTGGCTTTCCTTATGCTGTTAATGAAGGCTTTTCGGATTTCTTTCAAGGCCTCACACATGTGCCAGTGAATTATGCCTTTGCAGGGTCAATGCCTGATCAGGAAAGTGTCTATTGGTCAATGAACATGAATCCTTATAAATTTGGATTGTCTGGCCCTGGGAGTACATCTTATTATAGTTCTTATGAGGTAAATGACCATTTGCCAAGAATGGAGATCAACAGGGATGAGTGGGAATACCCTTCAGTAATGATCACTGAGGAATCAGCTACAGCAGATTCTCCACCTAGAAGAGATGGAGTCACAAGCATGCAGACTATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAATAGTAGCCAGGTCATATGGCAAGATGACATTGATCCCGATAATATGACTTATGAGGAACTACTAGACCTAGGGGAGGCAGTTGGAACACAAAGCCGAGGCCTTTCCCAAGAACTTATTAATATGCTTCCAACCTCAAAATACAAATTCAGTAGCTTATTCAAAAGAAAAAATTCGGGGAAAAGGTGTGTAATTTGTCAGATGACATATAGAAGAGGCGACCAGCTAATAAAATTGCCATGCAGCCATGTTTATCATGGTGAATGCATTACCAAATGGCTCAGCATTAACAAGAAATGTCCTGTTTGCAATATCGAGGTGTTTGGTGAGGAATCAACGCATTAG 738 0.4133 MNDGRQMGVHYVDAGFPYAVNEGFSDFFQGLTHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNDHLPRMEINRDEWEYPSVMITEESATADSPPRRDGVTSMQTIPEECSPNHHESNSSQVIWQDDIDPDNMTYEELLDLGEAVGTQSRGLSQELINMLPTSKYKFSSLFKRKNSGKRCVICQMTYRRGDQLIKLPCSHVYHGECITKWLSINKKCPVCNIEVFGEESTH 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4524g00002 245 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Gabi4524g00002 245 Pfam Ring finger domain 193 235 IPR001841 -
Gabi4524g00002 245 FunFam E3 ubiquitin ligase BIG BROTHER 156 239 - -
Gabi4524g00002 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Gabi4524g00002 245 SUPERFAMILY RING/U-box 193 239 - -
Gabi4524g00002 245 SMART ring_2 194 234 IPR001841 -
Gabi4524g00002 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4524g00002 Gabi-Chr4524 27844 34501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4524g00002 9 245 C3H Transcription Factor Family AT3G63530 55.462 3.08e-98 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4524g00002 K19045 - gmx:100792734 461.07