Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4523g00003 ATGTCTCAGCAGGGCGAATCATCAGGGAAGAAAGACTTCTCGACGGCGATTCTTGAGCGGAAGAAGTCGCCGAACCGATTAGTTGTTGATGAGGCAGTCAACGATGACAACTCCGTTGTGTCCTTGCACCCTCAAACCATGGAAAAGCTTCAGATTTTCATCGGCGACACTATCCTCATCAAGGGCAAGAAACGGAGGGATACGATATGCATAACTCTTGGTGATGAGAATTGTGAGGAATCCAGGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGAGGGTTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCAGCGATGTCAAGTATGGGAAGCGTGTCCACATTCTTCCCATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGACACTTACTTGAAACCTTATTTCTTGGAGGCTTATCGTCCAGTTAGAAAAGGTGATTTATTTCTTGTCCGAGGAGGGATGAGGAGCATAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCGGACACTGAAATCTTCTGTGAGGGGGATCCTGTGAAAAGGGAGGATGAAGAAAGGCTGGATGAAATTGGGTACGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATACGTGAGTTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAGACAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGATCTGGTAAGACATTAATAGCTAGAGCTGTAGCTAATGAAACTGGAGCGTTCTTCTTTTGTATTAATGGGCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAATCTTAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCTCCCTCCATCATCTTTATTGATGAGATTGATTCTATTGCGCCCAAGAGGGAGAAGACACATGGCGAAGTTGAAAGGAGGATTGTTTCCCAACTTCTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTTATTGTTATCGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAACTTTCCGATGATGTTGACTTAGAGAGAATTGCGAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCCCTTTGCACTGAAGCTGCTCTGCAATGCATTAGGGAGAAGATGGACGTCATCGACTTGGAAGATGAGACTATTGATGCTGAAGTATTGAATTCTATGGCAGTTTCAAATGAGCACTTCCAGACTGCTCTAGGAACAAGCAATCCATCAGCTTTACGTGAAACTGTGGTTGAGGTGCCTAATGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTTGAGAAGTTTGGCATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTGGCTAAAGCAATTGCTAATGAATGTCAAGCTAATTTCATCAGTGTGAAGGGCCCAGAATTACTTACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTCGACTCCATTGCTACTCAGAGAGGAAGTAGTGCTGGGGATGGTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCTAAAAAGACCGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGACCCAGCGCTTCTTCGGCCTGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCCGATGAAGACTCCCGTCATCAAATCTTCAAGGCGTGCATGAGGAAGTCACCTGTCTCAAAAGATGTTGATTTGAGAGCACTAGCTAAGTATACTCAAGGCTTCAGCGGTGCTGATATAACAGAGATATGCCAGAGATCATGCAAATATGCTATAAGAGAAAACATAGAGAAGGACATAGAGCAAGAGAGGAAGAGAAGAGAAAACCCTGAGGCCATGGAAGAAGACATGGAGGATGATGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTATGCACGTAGGAGTGTTAGTGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAGCAATCCAGGGGCTTCGGAAGTGATTTTAGGTTTCCAGAGAGTGGAGGTAGGACCACTGGATCTGACCCCTTTGCAACCTCTGCTGGCGGGGCTGATGAAGAGGATCTCTATAGTTAG 2406 0.448 MSQQGESSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSLHPQTMEKLQIFIGDTILIKGKKRRDTICITLGDENCEESRIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPIDDTIEGVTGNLFDTYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPGEYCVVAPDTEIFCEGDPVKREDEERLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKTIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSAGDGGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACMRKSPVSKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEQERKRRENPEAMEEDMEDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSDFRFPESGGRTTGSDPFATSAGGADEEDLYS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4523g00003 801 CDD RecA-like_CDC48_r1-like 205 370 - -
Gabi4523g00003 801 FunFam Transitional endoplasmic reticulum ATPase 4 108 - -
Gabi4523g00003 801 Pfam AAA+ lid domain 393 435 IPR041569 -
Gabi4523g00003 801 Pfam AAA+ lid domain 669 710 IPR041569 -
Gabi4523g00003 801 Pfam Cell division protein 48 (CDC48), domain 2 128 191 IPR004201 -
Gabi4523g00003 801 Pfam ATPase family associated with various cellular activities (AAA) 241 370 IPR003959 GO:0005524|GO:0016887
Gabi4523g00003 801 Pfam ATPase family associated with various cellular activities (AAA) 514 647 IPR003959 GO:0005524|GO:0016887
Gabi4523g00003 801 Pfam Cell division protein 48 (CDC48), N-terminal domain 26 107 IPR003338 -
Gabi4523g00003 801 SUPERFAMILY ADC-like 22 106 IPR009010 -
Gabi4523g00003 801 Gene3D - 4 108 - -
Gabi4523g00003 801 PANTHER AAA-FAMILY ATPASE 440 765 - -
Gabi4523g00003 801 FunFam Cell division control 48 109 205 - -
Gabi4523g00003 801 Gene3D - 372 463 - -
Gabi4523g00003 801 SMART AAA_5 510 649 IPR003593 GO:0016887
Gabi4523g00003 801 SMART AAA_5 237 373 IPR003593 GO:0016887
Gabi4523g00003 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 760 IPR027417 -
Gabi4523g00003 801 MobiDBLite consensus disorder prediction 766 801 - -
Gabi4523g00003 801 SUPERFAMILY Cdc48 domain 2-like 108 200 IPR029067 -
Gabi4523g00003 801 Gene3D - 109 205 - -
Gabi4523g00003 801 ProSitePatterns AAA-protein family signature. 617 635 IPR003960 GO:0005524|GO:0016887
Gabi4523g00003 801 FunFam Transitional endoplasmic reticulum ATPase 464 647 - -
Gabi4523g00003 801 SMART CDC48_N_2 26 109 IPR003338 -
Gabi4523g00003 801 Gene3D - 464 647 IPR027417 -
Gabi4523g00003 801 FunFam Transitional endoplasmic reticulum ATPase 203 370 - -
Gabi4523g00003 801 Gene3D - 651 759 - -
Gabi4523g00003 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 462 IPR027417 -
Gabi4523g00003 801 CDD RecA-like_CDC48_r2-like 485 645 - -
Gabi4523g00003 801 FunFam Cell division control 48 372 463 - -
Gabi4523g00003 801 Gene3D - 206 370 IPR027417 -
Gabi4523g00003 801 NCBIfam CDC48 family AAA ATPase 27 763 IPR005938 GO:0016787
Gabi4523g00003 801 SMART CDC48_2_2 126 192 IPR004201 -
Gabi4523g00003 801 ProSitePatterns AAA-protein family signature. 341 359 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4523g00003 Gabi-Chr4523 56163 60594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4523g00003 443 706 Calmodulin-binding Proteins AT3G56690 48.106 1.21e-80 278