Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4520g00006 ATGGACAAACAAATTGACTACAACACTAGAAGAACAAACCCCACTTCCCCAACGCGCCTAAAGCTCTTTGGGTTCAGCGTCCAAGAAGACAACATGGAACACGATGTGATGCATGAAGACGTGGCAGACTCAACCACCAAGGCCACTTCCACTTCCCCTTCTCCTTCTCCATCTGGGTCGCCGGACTCAGGCGGTGGAAGTGGAAGTGGAAGTGGAGGTGGCGCTTGCCCTCCTTCCTCCGGTGACCGGAAATACGAGTGCCAGTACTGTTTCAGAGAGTTCGCAAATTCACAAGCACTTGGTGGGCACCAGAACGCACACAAGAAAGAGCGTCAACAACTCAAGCGTGCCCAGTTACAGGCCACTCGAAACGCCGCCGTTTCGTTCGTGCGAAACCCGATCATCTCCGCCTTCTCCCCTCCGCCTCACCTGCTGGCTCCGCCGGGATCCATGATGGTCCCGGCGGCCGCGCCCTCGTGGGTTTACTTGCCGCCACGTGCCGCGCCTCCTCCCTTCCACGTGTCAGTATCACACGGTTGTGTGTTCCCGTCGGCGAGCAGCAACAGCATGTGTAATAATAGTAATATCACCATAACAGGTGTGAAATCAGCGGGTGCGGGGATGTTTCCTTATGTTGGCGTTGTAGGGGATTCGTCAACCGCATTGTCAACGATGCAGGTACAAGCCCGGGCCCACCATGCTAGTACCAATGGACCCTCTTTGAGTAGGTTCTCTAAAGGAGACGGTGGGCCCAATTTCGATGATGCATTGGGCTTGGACTTGCACCTTAGCCTTGCGCCAGCTGCGCCGTGA 813 0.5572 MDKQIDYNTRRTNPTSPTRLKLFGFSVQEDNMEHDVMHEDVADSTTKATSTSPSPSPSGSPDSGGGSGSGSGGGACPPSSGDRKYECQYCFREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFSPPPHLLAPPGSMMVPAAAPSWVYLPPRAAPPPFHVSVSHGCVFPSASSNSMCNNSNITITGVKSAGAGMFPYVGVVGDSSTALSTMQVQARAHHASTNGPSLSRFSKGDGGPNFDDALGLDLHLSLAPAAP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4520g00006 270 Gene3D Classic Zinc Finger 76 132 - -
Gabi4520g00006 270 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Gabi4520g00006 270 PANTHER ZINC FINGER PROTEIN 5 9 269 IPR044299 GO:0010090
Gabi4520g00006 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Gabi4520g00006 270 MobiDBLite consensus disorder prediction 8 22 - -
Gabi4520g00006 270 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gabi4520g00006 270 MobiDBLite consensus disorder prediction 43 67 - -
Gabi4520g00006 270 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4520g00006 Gabi-Chr4520 68621 69856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4520g00006 3 268 C2H2 Transcription Factor Family AT1G68360 45.324 5.71e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4520g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4520g00006 - - gmx:102663095 375.555