Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4520g00005 ATGGGAATGGGTTCGAAGATGGAAGGAACGTCTACCCCAGCAATTCGACGTGACCCATATGAGGTTTTGTCCGTGTCAAGAGACTCAACCGATCAAGAAATTAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCACCCTGACAAAAATGTCAACAATCCTGAAGCTTCAGAACTATTTAAAGAGGTTGCATATTCTTACAGTATCTTGTCTGACCCAGAGAAGAGAAGGCAATATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAACATGGACATGGAAATTGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGAGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTCTGAATGGCACAGTTACAGTCAGACCCCTTCCTATTGGGACATCAGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTAACAATAAATGAGCAGCAAGCTGAGTCAGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGTAAATTCAAGCTGCTCTACTTTGAACAAGATGCAAATGGTGGCTATGGTTTGGCATTGCAGGAAGACAGTGAGAAGACTGGCAAGGTGACGTCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAACTAAAGCCTGGCACTCATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACAATTGAGGCAGTATGTGTGAAATCACATGAAGAAACCACCCAAAAACTTAAGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCTCGTTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGACTGTAGACGAGCTTCTGAAACAAAGGGACAGTATCCATTCTTCCTTCAGCATTTTCAAGTCAACCAATATTAGTGGAAGTGGTAGTAATATAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGTTGAGAGCCCTGGGGAAGATGGAGGGTCAGATGGCAAGGATAAATCAGGCAAGAAGAAATGGTTTAATTTGAATATTAAAGGTTCTGATAAGAGGTTGATTTAA 1245 0.4056 MGMGSKMEGTSTPAIRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNVNNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADNMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCVKSHEETTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTDRYTKEKQTVDELLKQRDSIHSSFSIFKSTNISGSGSNISNGSSSKISGEDSKVESPGEDGGSDGKDKSGKKKWFNLNIKGSDKRLI 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4520g00005 414 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Gabi4520g00005 414 SMART dnaj_3 17 75 IPR001623 -
Gabi4520g00005 414 SUPERFAMILY Chaperone J-domain 17 88 IPR036869 -
Gabi4520g00005 414 CDD DnaJ 18 72 IPR001623 -
Gabi4520g00005 414 Gene3D DnaJ domain 4 100 IPR036869 -
Gabi4520g00005 414 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 412 - -
Gabi4520g00005 414 PRINTS DnaJ domain signature 75 94 IPR001623 -
Gabi4520g00005 414 PRINTS DnaJ domain signature 38 53 IPR001623 -
Gabi4520g00005 414 PRINTS DnaJ domain signature 20 38 IPR001623 -
Gabi4520g00005 414 PRINTS DnaJ domain signature 55 75 IPR001623 -
Gabi4520g00005 414 FunFam Chaperone protein dnaJ 16 3 100 - -
Gabi4520g00005 414 Coils Coil 288 343 - -
Gabi4520g00005 414 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Gabi4520g00005 414 MobiDBLite consensus disorder prediction 363 401 - -
Gabi4520g00005 414 MobiDBLite consensus disorder prediction 363 378 - -
Gabi4520g00005 414 MobiDBLite consensus disorder prediction 379 401 - -
Gabi4520g00005 414 Pfam DnaJ domain 18 80 IPR001623 -
Gabi4520g00005 414 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4520g00005 Gabi-Chr4520 46007 51784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4520g00005 9 91 C2H2 Transcription Factor Family AT1G74250 39.773 3.06e-13 69.7