Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4520g00001 ATGGCTGCAACACTCTTGCGCCTCATTGCTACTTTTGTGGTTTTTCATTTTCTTATCATGGTTCAAGGGTCGATAAACCCAGACTTGGAAGCTCTCGTTGCCTTCAAAACTGGTTCAGACACATCTAAGAAGCTTATAAGTTGGAACACCAGCAACAACCCATGCACATGGGGCGGCGTCTCCTGCATCAAAAACCGAGTCTCGCGACTCGTTCTCGAAAACCTCGACCTTCGAGGTTCCATTGAGCCCTTAACTTCTCTGACTCAGCTCCGAGTCCTCAGCCTCAAGGGGAACCGTTTTTTCGGTCCCGTTCCGAGTCTCTCCAACTTAACCGTTTTGAAGCTACTCTTCTTGTCTAACAATGAGTTTTCCGGCGAGTTCCCGTCGACCATCACGTCGCTTTTCCGCTTGTACCGACTCGATCTGTCCCACAATAACTTCTCCGGCGAGATTCCTGCTACGGTTAGTCATTTGACTCACCTCCTCACTCTCCGTCTCGACGATAACCGGTTCTCCGGCTACATTCCCGATGTGAACCTTCCCAACCTGCAAGACTTCAACGTCTCCGGGAACCGCCTCTCCGGCGAGATACCGAAATCGTTATCAGGTTTCCCCGTATCCTCATTCGGGCAAAACCCATCTCTCTGCGGAGCCCCAATGGAGAAATGCGTGGCTGTCGCTGACCCGAGCAAACCCGGATCCGACGGTGCCGTTGCTTCGCCGGTGATGTCACGCAGCAACACCCCAACAAGTGTGTCATCTTCACCGAGTTCAATGCCAAGAGCATCAAGTAGCAAAAAACAAGAAAATGGAGGTTCTAAAATAAGCCCAGTGGCACTGATAATCATTATAGTGGGAGATGTTTTGGTCCTTGGCATAGTTTCATTGCTTCTGTATTGCTACTTCTGGAGAAACTACTCAGCGAAGTTGAAGGAAGGGAAAGGATCAAAGCTTTTTGAGAGTGAAAAGATTGTATATTCATCGAGTCCGTATCCTGGTCAAGGAGGGTGTGAGAGGGGTCGAATGGTGTTCTTTGAAGGAGAAAAGAGGTTTGAACTGGAGGACTTGCTGAGAGCCTCAGCTGAAATGCTAGGGAAAGGTGGGTTTGGGACTGCATACAAAGCGGTCCTCGATGATGGAAGTGTTGTTGCGGTGAAGAGATTGAAGGATGCGCAGATTGCAGGGAAGAGGGAGTTCGAGCAGCACATGGAACTGCTGGGAAGGCTAAGGCATCCAAACATTGTAAGCTTGAGGGCTTATTATTTTGCAACTGAGGAGAAGCTCCTCGTCTATGATTACATGCCCAATGCCAGCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGGCTCAAGATAGCAGCAGGAGCGGCACGAGGCGTGGCATTTATTCACAACTCATGCAAGTCACTCAGGCTCACTCACGGTAACATCAAATCCACTAACATCCTCCTTGACAAGCAGGGAAATGCACGCGTCTCTGATTTTGGGCTATCTATCTTCGCGGGCCCGGGTCAGGGCCCAGCGGGCGGAAGATCTAACGGCTACCGTGCTCCGGAGGTATCTGACGGTCGAAAACAATCCCAGAAATCTGACGTGTACTCTTTTGGTGTTCTCTTGCTGGAGCTGCTCACAGGGAAATGTCCCTCCGCTGTGGACGGTGGTGGGCCAGGTAGTGGCTATGGTGGGGCCGTGGATCTACCCAGGTGGGTCCAGTCAGTGGTGAGAGAGGAATGGACGGCTGAGGTGTTTGATTTGGAGCTGATGAGGTACAAGGATATTGAGGAGGAGATGGTGGGGCTGCTGCAGATAGCTATGGCCTGTACTGCAGCTGCACCTGATCAACGGCCCAGGATTAGCCACGTGGTCAAGATGATTGAGGATCTGCGTGGGGTCGAGGTGTCGCCGTGTCATGACACGTTAGACTCGGTGTCTGAGTCACCTTCCTTGTGTGAAGATGCGTGCGGAACTAGTCAGTAA 2007 0.5162 MAATLLRLIATFVVFHFLIMVQGSINPDLEALVAFKTGSDTSKKLISWNTSNNPCTWGGVSCIKNRVSRLVLENLDLRGSIEPLTSLTQLRVLSLKGNRFFGPVPSLSNLTVLKLLFLSNNEFSGEFPSTITSLFRLYRLDLSHNNFSGEIPATVSHLTHLLTLRLDDNRFSGYIPDVNLPNLQDFNVSGNRLSGEIPKSLSGFPVSSFGQNPSLCGAPMEKCVAVADPSKPGSDGAVASPVMSRSNTPTSVSSSPSSMPRASSSKKQENGGSKISPVALIIIIVGDVLVLGIVSLLLYCYFWRNYSAKLKEGKGSKLFESEKIVYSSSPYPGQGGCERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGSVVAVKRLKDAQIAGKREFEQHMELLGRLRHPNIVSLRAYYFATEEKLLVYDYMPNASLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSLRLTHGNIKSTNILLDKQGNARVSDFGLSIFAGPGQGPAGGRSNGYRAPEVSDGRKQSQKSDVYSFGVLLLELLTGKCPSAVDGGGPGSGYGGAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTAAAPDQRPRISHVVKMIEDLRGVEVSPCHDTLDSVSESPSLCEDACGTSQ 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4520g00001 668 Gene3D Phosphorylase Kinase; domain 1 338 433 - -
Gabi4520g00001 668 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 645 - -
Gabi4520g00001 668 ProSitePatterns Protein kinases ATP-binding region signature. 364 396 IPR017441 GO:0005524
Gabi4520g00001 668 Gene3D Ribonuclease Inhibitor 110 224 IPR032675 -
Gabi4520g00001 668 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Gabi4520g00001 668 FunFam pollen receptor-like kinase 1 332 433 - -
Gabi4520g00001 668 ProSiteProfiles Protein kinase domain profile. 358 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4520g00001 668 Gene3D Ribonuclease Inhibitor 19 109 IPR032675 -
Gabi4520g00001 668 SUPERFAMILY L domain-like 49 212 - -
Gabi4520g00001 668 FunFam Nuclear pore complex protein NUP107 25 177 - -
Gabi4520g00001 668 MobiDBLite consensus disorder prediction 240 272 - -
Gabi4520g00001 668 SUPERFAMILY Protein kinase-like (PK-like) 362 635 IPR011009 -
Gabi4520g00001 668 CDD STKc_IRAK 364 638 - -
Gabi4520g00001 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 640 IPR046959 -
Gabi4520g00001 668 Gene3D Transferase(Phosphotransferase) domain 1 434 651 - -
Gabi4520g00001 668 MobiDBLite consensus disorder prediction 234 272 - -
Gabi4520g00001 668 Pfam Protein kinase domain 362 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4520g00001 668 MobiDBLite consensus disorder prediction 514 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4520g00001 Gabi-Chr4520 12826 15682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4520g00001 28 668 Receptor kinase-like Gene Family AT1G68400 68.645 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4520g00001 Pkinase 1.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4520g00001 - - vum:124834036 1064.68