Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4519g00003 ATGATGATGGAGAAGCACAAGTGCAAGCTTTGCTTCAAGAACTTCTCCAATGGAAGAGCCTTAGGAGGTCACATGAGGTCTCACATGATGAACCTACCTGTTCCTCCAAAACCGAACGAGGCACCACCACCACCGCCACCACCACCAACGATTCAACTCAGCTTCGAGGCCGAGTCAGCTTCATCTCCATCACCATCATCTTTCGATCAAGAAGAAGATAAGGGTCTTTCCTATGGCCTCAGAGAGAACCCAAAGAGGAACTTTCGCTTCGCGGATCCTGAATTCTCGTTCCCCGCTGCTGTAGATACAGGGTCCGTGATCCTTCAAGACAGAGAAAGCGAGACCGAGTCATCAAGGAACCCAACTCGGAAACGATCCAAGAGGGCACGCAAACTCAGCTTCTTCGATCACCAAACCACAAAAAGAACCAAACTTTGCAAACCCATTATCAAGAACGAGTCAGCAAGCTCGGTTTCCGACACGACCACGGAGGAAGATGTCGCATTCTGCCTCATGATGCTGTCTCGCGACAAGTGGAAACGCCAACAACACTGCGAGGAAGAACAAGAACAAGAAAAAGAACAAGAAGATGATGCTGAAGATCAAGAAGATCAAGAAGAAGAAGAAGAAGAAGATGAAGATAGTGATGAATCCGAGGAGGAGCTGAAAACGACAACGAGGGTACGAGGAAGGTACAAATGTGACACGTGCAACAAGGTGTTTCGATCTTACCAGGCATTGGGTGGACACAGAGCGAGTCACAAGAAGATCAAGGTGGTGGATCATGAACCTCAATTGGTGGGGCATGAGAATAATAACGGTGCTATCATGGTGGTGGAGAAGAAAATCCATGAATGCCCCGTTTGTTTCAGGGTTTTTGCTTCGGGTCAAGCTCTTGGTGGACACAAGAGAACACATGTTACCGGTTCAGCAACAGTAACAAACCCGGTTCGAAGTTCCATAAAGTTTGGAGACAGTTTGATAGATCTCAACCTCCCTGCTCCTATGGATGATGATGATGTTAGCCAAATCGATGATTCAGCTGTTTCAGATGCAGAATTTATCAAACCCCATTAG 1077 0.4717 MMMEKHKCKLCFKNFSNGRALGGHMRSHMMNLPVPPKPNEAPPPPPPPPTIQLSFEAESASSPSPSSFDQEEDKGLSYGLRENPKRNFRFADPEFSFPAAVDTGSVILQDRESETESSRNPTRKRSKRARKLSFFDHQTTKRTKLCKPIIKNESASSVSDTTTEEDVAFCLMMLSRDKWKRQQHCEEEQEQEKEQEDDAEDQEDQEEEEEEDEDSDESEEELKTTTRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVVDHEPQLVGHENNNGAIMVVEKKIHECPVCFRVFASGQALGGHKRTHVTGSATVTNPVRSSIKFGDSLIDLNLPAPMDDDDVSQIDDSAVSDAEFIKPH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4519g00003 358 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 356 IPR044303 GO:0006355
Gabi4519g00003 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Gabi4519g00003 358 Pfam C2H2-type zinc finger 6 29 - -
Gabi4519g00003 358 Pfam C2H2-type zinc finger 284 306 - -
Gabi4519g00003 358 Pfam C2H2-type zinc finger 231 256 - -
Gabi4519g00003 358 MobiDBLite consensus disorder prediction 54 71 - -
Gabi4519g00003 358 Coils Coil 176 219 - -
Gabi4519g00003 358 MobiDBLite consensus disorder prediction 190 219 - -
Gabi4519g00003 358 MobiDBLite consensus disorder prediction 101 134 - -
Gabi4519g00003 358 MobiDBLite consensus disorder prediction 35 52 - -
Gabi4519g00003 358 ProSitePatterns Zinc finger C2H2 type domain signature. 286 306 IPR013087 -
Gabi4519g00003 358 Gene3D Classic Zinc Finger 223 306 - -
Gabi4519g00003 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Gabi4519g00003 358 SUPERFAMILY beta-beta-alpha zinc fingers 231 306 IPR036236 -
Gabi4519g00003 358 SUPERFAMILY beta-beta-alpha zinc fingers 5 33 IPR036236 -
Gabi4519g00003 358 SMART c2h2final6 6 28 IPR013087 -
Gabi4519g00003 358 SMART c2h2final6 232 254 IPR013087 -
Gabi4519g00003 358 SMART c2h2final6 284 306 IPR013087 -
Gabi4519g00003 358 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Gabi4519g00003 358 MobiDBLite consensus disorder prediction 182 225 - -
Gabi4519g00003 358 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Gabi4519g00003 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 311 IPR013087 -
Gabi4519g00003 358 MobiDBLite consensus disorder prediction 23 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4519g00003 Gabi-Chr4519 57104 58385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4519g00003 3 344 C2H2 Transcription Factor Family AT3G60580 45.763 7.18e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4519g00003 zf-C2H2_6 2.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4519g00003 - - aprc:113850450 391.734