Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4519g00002 ATGGCTTTGATTGTGGATCAACAATCAACCTTCAAGCACTTTTGTAAAATCTGCAAAAAAGGTTTTGGTTGTGGAAGAGCTCTAGGAGGTCACATGAGGGCACATGGCATAGGTGATGAAACGGGGCACATGGATGATGATGACCCTGCAAGTGATTGGGAAGAAAGGCTCGGTGGTGGTAACGTTCCACCAAGCAACAAGCGCATGTATGCTCTAAGAACAAACCCTAACAGGCTAAAGAGTTGTAGGGTTTGTGAGAATTGTGGCAAAGAGTTTTTATCTTGGAAATCTTTCCTTGAACATGGGAAATGCACCTCCGAGGACGCCGCAGAGTCCCCGGTGTCCTCTCCGGGCTCCGACGCAGCCGATGATATCATTGACGACGACGGGATCCGGAGAGGATGTGGTGGTTGGTCCAAAAGGAAAAGATCATTGAGAACCAAAGTTGGTAGCTTCAATTATAATTGCCCTTCAAGCGAGGAAGAAGACCTTGCAAATTGTTTGATGATGTTATCCAATGCCATTGTTGATCCTCTTGTAGCTGAACCCGAAGAGTCATGTGCCTCAGCTAGCAAAGATGAAGACCGAAGAAACCCCATGAATAACTTCATTCCACCATTGTCATGCAGAGTTCCCATTGATAACAACAACAACAACAACAAGGCCAAAGGTGTCGCAAAAGGGTTATTCGAATGCAAAGCTTGTAAGAAAGTTTTCAACTCTCATCAAGCATTGGGAGGACATAGAGCAAGCCACAAGAAAGTTAAGGGTTGTTTTGCTGCAAGACTAGACAACAACCTTGATGATAGTCTCGCAACAACAGAAGATGATGTCATAACACATGAAGAGTTCTTCCCTACAAAATCAAACTCAACGCAACTCCAATTTGATCATCATCATCATGGTTCTAATAACAACCCCACATTGGCCTCTTCCTCTAAGAAGAAATCAAAAGTTCATGAATGTTCAATTTGTCATAGGAGTTTCTCTTCCGGACAAGCATTGGGTGGACACAAGAGGTGCCATTGGATCACATCAAATGCACCAGAAACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCACATGGATCAAATACCAAAATTTGATAGCTCTTCTGAACCACTTGATCTCAAGCTAGACCTTAACCTTCCAGCTCCAACCAATGACCTTGCAAGAAGGAATGTGTCCACAGAAATTTACTTGCAGCCATGGGTTGCAACAACAAAGGATGTTGTTGTTAAAGATGATAATAGTAGTCAATGTCAGAGTCACCAACACCATAATCAAGTTGACAATGACAATGATGAGGATAAAAATAATAATAATAATAATAATAATAACTCCTACAATGCTAGTTTGATGCAGAATGGGGATAATGAAGCTGATAGTAAGATCAAGTTAGCAAAACTAAGTGAGCTTAAGGATATAAACATTGGTGGCAGTTCTTCACCATGGTTGCAGGTTGGAATTGGTTCAACAACTACTGATGTGGGGACTGATCACTGCTGA 1515 0.4198 MALIVDQQSTFKHFCKICKKGFGCGRALGGHMRAHGIGDETGHMDDDDPASDWEERLGGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAAESPVSSPGSDAADDIIDDDGIRRGCGGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKDEDRRNPMNNFIPPLSCRVPIDNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNNLDDSLATTEDDVITHEEFFPTKSNSTQLQFDHHHHGSNNNPTLASSSKKKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPETSTLARFQQFQDHMDQIPKFDSSSEPLDLKLDLNLPAPTNDLARRNVSTEIYLQPWVATTKDVVVKDDNSSQCQSHQHHNQVDNDNDEDKNNNNNNNNNSYNASLMQNGDNEADSKIKLAKLSELKDINIGGSSSPWLQVGIGSTTTDVGTDHC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4519g00002 504 MobiDBLite consensus disorder prediction 38 67 - -
Gabi4519g00002 504 PANTHER OS02G0659100 PROTEIN 2 497 - -
Gabi4519g00002 504 MobiDBLite consensus disorder prediction 107 127 - -
Gabi4519g00002 504 Gene3D Classic Zinc Finger 11 104 - -
Gabi4519g00002 504 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Gabi4519g00002 504 MobiDBLite consensus disorder prediction 38 54 - -
Gabi4519g00002 504 SMART c2h2final6 230 252 IPR013087 -
Gabi4519g00002 504 SMART c2h2final6 320 342 IPR013087 -
Gabi4519g00002 504 SMART c2h2final6 13 35 IPR013087 -
Gabi4519g00002 504 MobiDBLite consensus disorder prediction 441 458 - -
Gabi4519g00002 504 Pfam C2H2-type zinc finger 230 254 - -
Gabi4519g00002 504 Pfam C2H2-type zinc finger 319 344 - -
Gabi4519g00002 504 Pfam C2H2-type zinc finger 13 35 - -
Gabi4519g00002 504 MobiDBLite consensus disorder prediction 289 313 - -
Gabi4519g00002 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Gabi4519g00002 504 SUPERFAMILY beta-beta-alpha zinc fingers 13 102 IPR036236 -
Gabi4519g00002 504 MobiDBLite consensus disorder prediction 417 458 - -
Gabi4519g00002 504 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Gabi4519g00002 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 320 342 IPR013087 -
Gabi4519g00002 504 ProSitePatterns Zinc finger C2H2 type domain signature. 322 342 IPR013087 -
Gabi4519g00002 504 SUPERFAMILY beta-beta-alpha zinc fingers 317 343 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4519g00002 Gabi-Chr4519 34488 36002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4519g00002 140 385 C2H2 Transcription Factor Family AT1G02040 36.653 4.98e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4519g00002 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4519g00002 - - ahf:112720137 757.673