Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4518g00001 ATGGCTGCCACAGCAACTGCGTCTTCGGTGGGTCCCCGATATGCTCCCGCGGACCCAACACTCCCTAAACCATGGCGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCGGAGACTAATGTCACCCAGTATGAGAGGCCTTCGAGCTCAGCTGCCCCGCCAAAGTCATCTTCAGTGCCTAGTTCTTCTGTCCATGTTCAACAATCATCTCAAGGGCAGCAACGTGGTCGCAGTCCTGATTTGAATGATAGGTATGATAGAAATGGCATTGGTGGGTCAAATGAAGCTGGATCACGGAACCATCAGAGTTCTAAAGGTGGAAGTAGTAGTTCTCATAATGTTCCAAATGACATGCATTTTGCTGGAAATGTTAGTTCTTCTATCAGAGGTAATGGGTCATCAGATGCAGGAGTATCTCCAGAGTCTTATCGACGTCGGCATGAAATAAGTGTTTCTGGAGATAATGTGCCTCCACCTCTTACATCATTTGGGTCTACTGGCCTTCCATCTGAGATTCTTAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCTATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTAATCCCAGCTTTTATTCACCTCAAGCGCTGTGGTAATAACTCCAAATTGGGCCCCAGTGTATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCGAGAATTTCTTGTGTGTGTTTATATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGTGGAGCAGATATTGTGGTAGCCACCCCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATAAGTCTTCATCAGATCTCTTACCTTGTGCTTGACGAGGCTGACAGGATGCTAGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTACTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGATCAATCCTGTCCAGGTGAACATTGGCAATGTAGATGAACTTGTTGCTAACAAGTCCATTACGCAGCATGTGGAAATATTAGCATCAATGGAGAAACACAAACGTCTAGAACATATTTTGCGGTCACAAGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCCCGGAATCTTACACGCCAATTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAACCAGTTTCGAACTGGGAGGTCTCCTGTGCTTGTAGCCACAGATGTTGCAGCCCGAGGACTGGACATCAAAGACATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCACAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTTTAGCTTATACTTTCTTTGGGGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTCTTGGAAGGTGCAAACCAGCGGGTCCCTCCAGAACTTCGTGAAATGTCATTGCGGGGTGGTGGGATGAGCAGACCCAGAAGATGGGGTTCTGGTGGCCGTGGGGGACGTGGTGACTCTGGATTTGGTGGAAGGGGTAGTGATGCAGGATATGGTGGAAGAGGTAGTGATTCAAATTATGGTGGAAGGGGTGGGCGGGGGACTGCTGCTTCTGGCAGAGGTGGAGACCGTGGGTTTGACTATGACTCTCAGAGGAATGATCGTGGTCGAAGCCCTGACAGGGGATCTAGTTGGAGTGATCGCTACAAAAACATTAACCGTGATCGCAGTCGTAGTCCTGACAGGGCTGCACCGCCACAGAATTCCCAAGTCAGCTTTCACAAAGCAATGATGGAACGCATTGGACGGGATAGTGATCGCAACAAGAACATTAATAGGGACCGAAGCCGCAGTCCTAGCCCTTACAGACAGGAGAGGGCCCCAGCAGTTCGTGAACGTTCCCCAGTTTACAGTTTTCATCGAACAATGATGGTACAAGGTCAGTCATCCCCTTCAACTCAACGGCAGCCTCACCTAAGCTCACCATCCTCTCCCGGTGGTGGTCGGTCTAACAATAGTCCTAAGAAAGAGCAGGCAGGATCTTTGGGTGATGGAAGGAATGGTGGATCTCATTCTTTCTACAATGGAGAAGAGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAGGTCAGGATGATGGCTTATATCAAAGTGTGGATTAG 2343 0.4742 MAATATASSVGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVHVQQSSQGQQRGRSPDLNDRYDRNGIGGSNEAGSRNHQSSKGGSSSSHNVPNDMHFAGNVSSSIRGNGSSDAGVSPESYRRRHEISVSGDNVPPPLTSFGSTGLPSEILKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSKLGPSVLVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQISYLVLDEADRMLDMGFEPQIRKIVNEVPTRRQTLMFTATWPKEVRKIAADLLINPVQVNIGNVDELVANKSITQHVEILASMEKHKRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQRVPPELREMSLRGGGMSRPRRWGSGGRGGRGDSGFGGRGSDAGYGGRGSDSNYGGRGGRGTAASGRGGDRGFDYDSQRNDRGRSPDRGSSWSDRYKNINRDRSRSPDRAAPPQNSQVSFHKAMMERIGRDSDRNKNINRDRSRSPSPYRQERAPAVRERSPVYSFHRTMMVQGQSSPSTQRQPHLSSPSSPGGGRSNNSPKKEQAGSLGDGRNGGSHSFYNGEEEEGMIPDEEGMIGQDDGLYQSVD 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4518g00001 780 Gene3D - 16 64 - -
Gabi4518g00001 780 FunFam DEAD box RNA helicase family protein 16 73 - -
Gabi4518g00001 780 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 543 - -
Gabi4518g00001 780 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 370 IPR014001 -
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 604 640 - -
Gabi4518g00001 780 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Gabi4518g00001 780 CDD SF2_C_DEAD 384 513 - -
Gabi4518g00001 780 SMART ww_5 20 53 IPR001202 GO:0005515
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 538 780 - -
Gabi4518g00001 780 FunFam probable ATP-dependent RNA helicase DDX17 138 373 - -
Gabi4518g00001 780 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 1 28 - -
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 47 171 - -
Gabi4518g00001 780 Pfam Helicase conserved C-terminal domain 396 504 IPR001650 -
Gabi4518g00001 780 Gene3D - 142 374 IPR027417 -
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 47 82 - -
Gabi4518g00001 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 521 IPR027417 -
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 97 142 - -
Gabi4518g00001 780 SMART ultradead3 184 387 IPR014001 -
Gabi4518g00001 780 Pfam DEAD/DEAH box helicase 189 359 IPR011545 GO:0003676|GO:0005524
Gabi4518g00001 780 Gene3D - 375 545 IPR027417 -
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 700 737 - -
Gabi4518g00001 780 SMART helicmild6 424 504 IPR001650 -
Gabi4518g00001 780 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 316 324 IPR000629 -
Gabi4518g00001 780 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Gabi4518g00001 780 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Gabi4518g00001 780 FunFam ATP-dependent RNA helicase RhlB 374 546 - -
Gabi4518g00001 780 MobiDBLite consensus disorder prediction 656 689 - -
Gabi4518g00001 780 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4518g00001 Gabi-Chr4518 41792 48888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4518g00001 163 544 Eukaryotic Initiation Factors Gene Family AT3G19760 34.278 4.76e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4518g00001 K12823 - gmx:100786511 1149.81