Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4516g00007 ATGGATGCTAAAGCTGACACTCCTCAAAACCCATCTAAAAGACACAAATGCTCGGCATGCTATAGGCAATATAAGAAGAGAGAGCATCTCATCGAGCATATGAAAATTTCATACCACTCTGTCCATCAGCCAAGATGTGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTTTAAGGGAACATCTTATCGGTCCTTTGCCAAAGGGAATTTGTTCAAAGATTTTCTCTCAACAGGGTTGTCAACTTTGCTTGACACTATTTGATAGCCCCAGCTCTCTCATTGAGCATAGAGAAACATGTCGCCTATCTGCCCCTGCTCCTCTAGGAACAATCGCATTGCCCTATATAGGCTCCCAAATTGATTGTCGAGGTCCTTCTGATGAAAACCATGCTGGCAGGCGCCCTTTAGCAATTGCATTGGACTGTGAAATGGTTGGTGGGGGAAGTGATGGATCTCTGGAACTCTGTGCTCGAGTATGCTTGGTTGATGAAGATGAGAACTTAATATTTCATGCCTATGTACAGCCTCAAATCCCTGTCACTAATTATAGATATGATATAACTGGGTTGACAGAAGAGTATCTTAGAGATGCCATTCCGCTTAAGGAAGTTCAAGAAAAGGTATTGCAAATTCTATACAATGGAGAATCCATTGGCAAAGTTAGATTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTGGCACATGATTTAGATTGCTTGAAATTGAATTATCCCGATCACATGCTCAGGGACACTGCAAAGTACCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTCAAGTATCTTACCCAAACATATCTAGGTTATGATATCCAATCCGGCACTCACGACCCATATGAAGATTGTATTTCTGTCATGAGACTGTATAAGAGAATACAAGGTCAAAATCATAAGGAGGAAGGCTATGGAACGTTGAGTCCACGTAACAAAATCGTTGGCATTTCTGATTGTTGGAGATCCAAGCAAGTTGACAACCTCACACCAGATGAACTCTATGCCATGTCAAGATCAGACTATAAGTGTTGGTGTTTGGATTTGAGGCCAAGATCGGCAGCCTGA 1098 0.4262 MDAKADTPQNPSKRHKCSACYRQYKKREHLIEHMKISYHSVHQPRCGVCQKHCKSFESLREHLIGPLPKGICSKIFSQQGCQLCLTLFDSPSSLIEHRETCRLSAPAPLGTIALPYIGSQIDCRGPSDENHAGRRPLAIALDCEMVGGGSDGSLELCARVCLVDEDENLIFHAYVQPQIPVTNYRYDITGLTEEYLRDAIPLKEVQEKVLQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKLNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTQTYLGYDIQSGTHDPYEDCISVMRLYKRIQGQNHKEEGYGTLSPRNKIVGISDCWRSKQVDNLTPDELYAMSRSDYKCWCLDLRPRSAA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4516g00007 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 313 IPR047021 GO:0004527
Gabi4516g00007 365 SUPERFAMILY Ribonuclease H-like 139 308 IPR012337 -
Gabi4516g00007 365 Pfam Exonuclease 139 302 IPR013520 -
Gabi4516g00007 365 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Gabi4516g00007 365 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Gabi4516g00007 365 Gene3D Classic Zinc Finger 2 65 - -
Gabi4516g00007 365 Gene3D - 137 317 IPR036397 GO:0003676
Gabi4516g00007 365 SMART exoiiiendus 137 311 IPR013520 -
Gabi4516g00007 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4516g00007 Gabi-Chr4516 73042 76264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4516g00007 1 358 C2H2 Transcription Factor Family AT3G27970 53.994 4.69e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4516g00007 K18327 - gmx:100788682 642.114