Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4516g00004 ATGGAGGAAAAGCCTGAGCTCATCCACGGAACAATTGAAGCTACCATCTTCAATGCTACACCTTACTCACCTTCATTTCCCTTCAATTGTATATGTACAAATGGGAAGCCTTCTTATGTGACCATCAAGATAGACAACAAGAGGGTGGTAAAAACGACCCAAGAAAGTGAACGTGTATGGAACCAGACCTTTCAGATTCATTGTGCTCATCCAGCTGATTCAATTATCACCATTACACTGAGAACATCATGCTGCATATTGGGGAAATTCAATATACAGTTTCAGCTGCTGAAGGAAGAGAGTTTGATCAATGGATTCTTTCCTCTCCTTAAGGAAAATGGAAAACCAAACCCACAACTAAAATTAAGATTTATATTATGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGAAAAGCTACTAAGCAATGGAGAATTTCAAGGGCTGAAGGATGCTACATTCCCACAAAGGTCAAATTGTCAGGTTAAGCTCTATCATGATGCTCACCATCCATCTTCTTTCCAACCTCCTTTTGATATATTTGAAGGTCCAAGAAAGCTATGGGAGGATGTATATAAAGCCATTGAGGGTTCAAAGTATTTAGTTTATATTGCAGGCTGGTCCTTTAATCCAAAGATGGTTCTGGTTAGAGACCCTCAAACAGAAATCCCACATGCCAGAGAAATAAAGCTGGGTGAGTTATTGATGAAGAAGGCAGAGGAAGGAGTAGCTGTAAGGGTTATGATTTGGGATGATGAAACATCGTTTCCTTTTATTAAGAACAAAGGTGTAATGAACACTCATGATGAAGATGCTTTTGCTTACTTCAAACACACAAAAGTAATATGCAAAAAGTGTCCTAGATTACACCACAAGTTCCCCCCACTCTTTAGTCACCATCAGAAGACCATAACTGTGGACACTAGAGTGCCCAACTCTGCTAATGACAGAGAAATTATGAGCTTTTTGGGTGGTGTAGATTTGTGTGATGGCCGTTATGATACAGAGAAACATTCTTTGTTTCAAACACTTACTGAGGAATCCCATTACCATGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGTGGGCCAAGGGAGCCTTGGCATGATGCTCATGCTTGTCTTACTGGTGAGGCTGCTTGGGACGTGTTAACAAATTTTGAACAAAGATGGACAAAGCAATGTGACCCTTCTCTTCTTGTCCCTGCTAACACATTAACAAATCTCATTCTGGATTTCTCAAGCACTCACATAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTCTCAGCTAGTCAGTTGTTTAGAAAGCTAACTGTGGAGAGAAGCATTCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTTTATACATTGAAAACCAATATTTCATTGGAGGATGCCATTTGTGGCAGAAAGATAAGCATAGTGGCTGCGGAAATCTGATTCCCATTGAGATAGCACTCAAAGTTGTTAGTAAGATTAAAGCAAGAGAGAGATTTGCAGCATACATAATCATACCAATGTGGCCAGAAGGAGTACCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACTAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATAATTGAAAGTGGGGAACCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGGAAAAGAGGAGTATCTTCCACCACATTCTCCCCATCCTGAAACACTATACTGGAATGCACAAAAAAATAGAAGGTTCATGGTTTATGTTCACTCCAAGCTCATGATAGTGGACGACCTATACATATTAATAGGATCAGCAAATGTGAACCAAAGATCCATGGACGGGGAAAGGGACACTGAGATTGCCATAGGGGGCTACCAGTCTCAAGATGGAGTTGATCACCAAATGAACCATGGTGATGTTCATGCATACAGAATGTCACTGTGGTATGAGCACACAGGTAGAGCTGAGGAATTGTTCTTAGAACCAGAAAGTTTGGAATGTGTGCAGAAAATGCGCTCAATAGGAGATCAAATGTGGAATATATACTCTAGTGAAGAAATTGTGGACATGGAAGGAGTGCACCTTGTAACTTACCCAGTGAAAGTAACCCAAAAAGGCTATGTGGAGGACCTGAGCAATGGTGGAGATCATTTTCCTGATACAAAATCTCTAGTGAAGGGGAAGAGATCTAAATTGTTACCCTCTATCTTTACCACTTAG 2274 0.4055 MEEKPELIHGTIEATIFNATPYSPSFPFNCICTNGKPSYVTIKIDNKRVVKTTQESERVWNQTFQIHCAHPADSIITITLRTSCCILGKFNIQFQLLKEESLINGFFPLLKENGKPNPQLKLRFILWFKPADLEPSWEKLLSNGEFQGLKDATFPQRSNCQVKLYHDAHHPSSFQPPFDIFEGPRKLWEDVYKAIEGSKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLMKKAEEGVAVRVMIWDDETSFPFIKNKGVMNTHDEDAFAYFKHTKVICKKCPRLHHKFPPLFSHHQKTITVDTRVPNSANDREIMSFLGGVDLCDGRYDTEKHSLFQTLTEESHYHDFYQTNIAGASLNKGGPREPWHDAHACLTGEAAWDVLTNFEQRWTKQCDPSLLVPANTLTNLILDFSSTHIERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFLYIENQYFIGGCHLWQKDKHSGCGNLIPIEIALKVVSKIKARERFAAYIIIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKGKEEYLPPHSPHPETLYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGERDTEIAIGGYQSQDGVDHQMNHGDVHAYRMSLWYEHTGRAEELFLEPESLECVQKMRSIGDQMWNIYSSEEIVDMEGVHLVTYPVKVTQKGYVEDLSNGGDHFPDTKSLVKGKRSKLLPSIFTT 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4516g00004 757 PANTHER PHOSPHOLIPASE D 8 739 IPR015679 -
Gabi4516g00004 757 PIRSF PLD_plant 4 757 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi4516g00004 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 332 IPR001736 GO:0003824
Gabi4516g00004 757 SUPERFAMILY Phospholipase D/nuclease 424 686 - -
Gabi4516g00004 757 SMART pld_4 602 629 IPR001736 GO:0003824
Gabi4516g00004 757 SMART pld_4 295 332 IPR001736 GO:0003824
Gabi4516g00004 757 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 128 IPR035892 -
Gabi4516g00004 757 Pfam Phospholipase D Active site motif 605 629 IPR001736 GO:0003824
Gabi4516g00004 757 SUPERFAMILY Phospholipase D/nuclease 146 406 - -
Gabi4516g00004 757 Pfam Phospholipase D C terminal 674 746 IPR024632 -
Gabi4516g00004 757 Pfam C2 domain 38 109 IPR000008 -
Gabi4516g00004 757 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 602 629 IPR001736 GO:0003824
Gabi4516g00004 757 Gene3D Endonuclease Chain A 414 654 - -
Gabi4516g00004 757 Gene3D Endonuclease Chain A 173 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4516g00004 Gabi-Chr4516 51943 54805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4516g00004 30 757 Phospholipase D Gene Family (Wang group) AT1G55180 61.943 0.0 962