Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4516g00001 ATGAAGCCTTTTTCTCTCATGTTACCTGCATTTTGCTCTACATTCCTTCACCTATTTTTTCTCTTTACTCTAAACTCATTGTGGTCTGGCCCAGAAACAACTGCCTCTGCATCGGGAAATAAAACTGATCACTTGGCATTGCTCAAATTCAAGGAATCAATATCCAACGACCCATATGGAATCTTGGTCTCTTGGAATAGTTCTACCCACTTCTGCAACTGGCATGGAATCACATGCAGCCCCATTCATCAAAGAGTTACTGAGTTGAACCTACAAGGCTATCAGTTGCATGGATTCATATCTCCACATGTTGGAAATCTCTCTTTTCTTATAAACCTCAACCTTAGAAACAATAGCTTTTATAGAAAAATCCCGCAAGAATTGGGTCGATTGTTACAACTGCAGCAACTCAAACTCACCAATAACTCTTTGTCAGGGGAAATTCCTAAAAATTTAACAAGTTGCTCTAATCTCAAAGGCTTATTCTTACCTGGGAACAATCTAATTGGAAAAATACCAATTGAAATTGCCTCTCTTCAGAAGCTCCAGCAATTGTACATGTCGGTAAACAATTTAACCGGAGGAGTCCCACCATTCATTGGGAATCTTTCATCCCTAACCATTCTCTCGGTGGTACGTAATAACTTAGAAGGAGGTATTCCAGAAGAAATATGCCGCCTCAAAAACTTGACAGTTATAGCAATGGCTACGAACAAAATGTCAGGTACATTTCCTTTTTGTCTTTACAATATGTCATCACTTACATATATCACAGCAGCAGAGAATCAATTTAATGGCTCTCTTCCACCATACATGTTCTTCACCCTTCCAAATCTCCACTTTTTTGGAATTGGCGTGAATCAAATCTCAGGTCCAATCCCCACTTCCGTTGCAAATGCTTCTGAACTTCAAGGACTTGATATCGGGGAAAACCATTTTGCGGGGCAAGTTCCAATTTTGGGGATGTTACAAGATCTTGAATTCCTACGTTTGTCTCAAAACAATCTAGGTGAAAATTCAACCATGGATTTGGAGTTTATAAAATCATTGACAAACTGTAGTAAGTTGCAACATTTAGGTATGTATGGAAATAATTTTGGAGGTCATTTGCCAAATTCATTGGGAAATTTATCCAGCCATGTCAGTGAACTATATCTTGGGGCTAATCAAATATCAGGAAAAATTCCCGCGGAATTAGGAAATCTAATTAGCTTATATCTCTTGGACATGCGACATAACCATTTTGAAGGGATTATTCCATCTGCATTTGGGAAGCTCCAGAATATGCAACTTTTAGATTTAGAAGAAAATAAGTTGTCAGGAGATATACCAACCTCAATAGGCAACCTCAGTCAGTTATTTCATTTGGGTTTGGGACACAATTTTTTAGAAGGAACTATTCCTCCAAGTATAGGAAACTGTCAAAAGTTACAATATCTAAATCTTTCCCACAACAATCTTGGAGGAACCATTCCCTTAGAGGTTTTTAGTCTTTCCTCTTTAACAAATTTACTAGATTTGTCACATAACTCATTGAGTGGTAGTCTACCAGATGAAGTGGGCCAATTGAAAAATGTTGATGTCCTAGATTTCTCTGAGAATCAACTATATGATAATGTTCCTGGAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTTCAAGGCAATTCCTTCCATGGTATCATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCAAGAAATCACTTGTCTGGATCAATTCCTGATGTTTTGCAAAATATTTCCTTCTTAGAATACTTGAATGTATCATTTAACATGTTGGTTGGTGAGGTACCAACTGAAGGTGTCTTTCGAAATGCAAGTGGGTTAACAGTTACCGGAAACAACAAGCTTTGTGGAGGTGTTTCAGAGCTGCATCTACCGCCTTGCCCTGTTAAAGGTGATAAACATGCAAAACACCATAATTTCAGGTTGATAGCAGTGATAATTAGTGTAGCTACTTTTCTTCTCATACTATCATCCATTCTTACTTTCTACTGGATAAGAAAAAGAAGCAAGAAATCATCTTCTGATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATACCAAAACCTACATTATGGAACTGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTTGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAGTTGTTGCCATAAAGGTCCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGGCATCGAAATCTAGTTAAGATTTTAACATGTTGTTCCAGCATAGATTTTAAAGGTGAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAACAAAAATTGCACATCAGCCTAGATCATTAAACCTTGAAGAAAGGTTAAATATTATTACTGATGTTGCTTCAGCAGTTCATTATCTTCACCACGAATGTGAGCAAGCTATCATTCATTGTGATTTGAAGCCTGGCAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTAAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTCTGATGCAAAGTAGCACAATTGAAATACAGGGAACAATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCAGAAGTGTCAATTGAAGGCGATGTGTATAATTTTGGAATTCTGATTTTAGAAATGTTGACTGGAAGGAGACCCACTGATGAAATGTTAAAAGATGGTCATACTATCCACAATTATGTTAAAATTTCAATTTCCAATAATTTTGTGGAGATTGTAGACCCAACTATTCTCCCCACTGAATTAGACCGGACTACTGAGAGAGAAAACCTCGGTCTTATGCATCCTAGTGTAGAGAAATGTTTACTCTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATGATTGATGTCACCAAGGAACTTAATATGATCAAAACTTTCTTCCCTTATGGGATTTAG 3072 0.3757 MKPFSLMLPAFCSTFLHLFFLFTLNSLWSGPETTASASGNKTDHLALLKFKESISNDPYGILVSWNSSTHFCNWHGITCSPIHQRVTELNLQGYQLHGFISPHVGNLSFLINLNLRNNSFYRKIPQELGRLLQLQQLKLTNNSLSGEIPKNLTSCSNLKGLFLPGNNLIGKIPIEIASLQKLQQLYMSVNNLTGGVPPFIGNLSSLTILSVVRNNLEGGIPEEICRLKNLTVIAMATNKMSGTFPFCLYNMSSLTYITAAENQFNGSLPPYMFFTLPNLHFFGIGVNQISGPIPTSVANASELQGLDIGENHFAGQVPILGMLQDLEFLRLSQNNLGENSTMDLEFIKSLTNCSKLQHLGMYGNNFGGHLPNSLGNLSSHVSELYLGANQISGKIPAELGNLISLYLLDMRHNHFEGIIPSAFGKLQNMQLLDLEENKLSGDIPTSIGNLSQLFHLGLGHNFLEGTIPPSIGNCQKLQYLNLSHNNLGGTIPLEVFSLSSLTNLLDLSHNSLSGSLPDEVGQLKNVDVLDFSENQLYDNVPGTIGECSSLEYLYFQGNSFHGIIPSSLASLKGLRHLDLSRNHLSGSIPDVLQNISFLEYLNVSFNMLVGEVPTEGVFRNASGLTVTGNNKLCGGVSELHLPPCPVKGDKHAKHHNFRLIAVIISVATFLLILSSILTFYWIRKRSKKSSSDSPTIDQLAKVSYQNLHYGTDGFSTRNLIGSGSFGSVYKGTIEPEDTVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSIDFKGEEFKALVFEYMTNGSLESWLHPATKIAHQPRSLNLEERLNIITDVASAVHYLHHECEQAIIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSLMQSSTIEIQGTIGYAPPEYGMGSEVSIEGDVYNFGILILEMLTGRRPTDEMLKDGHTIHNYVKISISNNFVEIVDPTILPTELDRTTERENLGLMHPSVEKCLLSLFRIALACSMESPKERMNMIDVTKELNMIKTFFPYGI 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4516g00001 1023 Gene3D Ribonuclease Inhibitor 163 271 IPR032675 -
Gabi4516g00001 1023 Gene3D Ribonuclease Inhibitor 272 342 IPR032675 -
Gabi4516g00001 1023 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 42 153 - -
Gabi4516g00001 1023 PANTHER OS04G0122200 PROTEIN 226 1016 - -
Gabi4516g00001 1023 SUPERFAMILY Protein kinase-like (PK-like) 687 1015 IPR011009 -
Gabi4516g00001 1023 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Gabi4516g00001 1023 ProSiteProfiles Protein kinase domain profile. 714 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4516g00001 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1020 - -
Gabi4516g00001 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 795 - -
Gabi4516g00001 1023 Gene3D Ribonuclease Inhibitor 42 158 IPR032675 -
Gabi4516g00001 1023 Gene3D Transferase(Phosphotransferase) domain 1 796 1018 - -
Gabi4516g00001 1023 Gene3D Ribonuclease Inhibitor 343 645 IPR032675 -
Gabi4516g00001 1023 ProSiteProfiles Leucine-rich repeat profile. 476 497 IPR001611 GO:0005515
Gabi4516g00001 1023 Gene3D Phosphorylase Kinase; domain 1 677 795 - -
Gabi4516g00001 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 650 - -
Gabi4516g00001 1023 SMART serkin_6 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4516g00001 1023 Pfam Leucine Rich Repeat 476 492 IPR001611 GO:0005515
Gabi4516g00001 1023 SUPERFAMILY L domain-like 379 634 - -
Gabi4516g00001 1023 Pfam Protein kinase domain 716 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4516g00001 1023 FunFam Leucine-rich repeat receptor protein kinase EMS1 172 271 - -
Gabi4516g00001 1023 SUPERFAMILY L domain-like 41 336 - -
Gabi4516g00001 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Gabi4516g00001 1023 SMART LRR_typ_2 203 227 IPR003591 -
Gabi4516g00001 1023 SMART LRR_typ_2 571 594 IPR003591 -
Gabi4516g00001 1023 SMART LRR_typ_2 402 425 IPR003591 -
Gabi4516g00001 1023 SMART LRR_typ_2 498 523 IPR003591 -
Gabi4516g00001 1023 SMART LRR_typ_2 450 474 IPR003591 -
Gabi4516g00001 1023 SMART LRR_typ_2 131 155 IPR003591 -
Gabi4516g00001 1023 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Gabi4516g00001 1023 Pfam Leucine rich repeat 404 461 IPR001611 GO:0005515
Gabi4516g00001 1023 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4516g00001 Gabi-Chr4516 33255 36702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4516g00001 40 1019 Receptor kinase-like Gene Family AT3G47570 46.472 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4516g00001 Pkinase 9.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4516g00001 - - gmx:100792724 1393.25