Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4513g00001 ATGCTTGTTATATTCATGCTACTCTTTTTCTTCTTTCACATGACCTATGCAGTTGATACCATTACCCAGTTTCAGTCACTTCCTGATAACGGAAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGTTTCTTCAATCCTGGTAGTTCCTCAAACCGCTATGTTGGAATATGGTACAAAAATATCCCAGTTAGAACTGTTGTTTGGGTTGCTAACCGTGACAACCCTATCAAAGACAACTCTAGCCAGTTAATCATAAGCAAAGAAGGAAACCTTGTGCTTCTAAGCCAGAATCAGACTCTTCTTTGGTCAACAAACTCAACAACAGAGGCTTTGAGTCCCATTGTGCAACTCTTAGACACTGGTAATTTAGTACTTCGAGATGAGAAGGACAACAACAATGAAACAAGTTTTCTGTGGCAGAGCTTTGACCATCCTTGTGATACAATATTACCAGGAATGAAGATTGGTTGGGACCTGAAAACTGGTCTCAATCGGCGTCTTACTGCTTGGAAAAATTGGGATGACCCCTCTTCAGGAGACTTTACTTCAAGTATGGTGCTTGGTGGCAATACTGAAATGGTAGTGTGGAAGGGTTCGGATGAGTACTACAGAACTGGTCCAATGAATGGTCTTATGTCAAGTGGAATATTCGGATTGAAAGCTAATCCACTTTACGATTACAAATTTGTCAAAAATGAAGATGAAGTGTATTACATATTCACACTCAAGAATAGTTCTGTGATTTCTATAATTGTTTTGAACCAAACACTTTATCTTCGTCAACGCCTCATATGGATTCCTGACACCAGAACTTGGAGAGTTTATCAATCCTTGCCACAAGACAGTTGTGATATTTATAATACTTGCGGCCCAAATGGAAATTGTATAATTTCTGGATCACCAATTTGCCAATGCTTCGAAGGATTCGAGCCAAAATCACCCCAACAATGGAATGCAATTGATTGGACACAAGGATGCGTGCGCAGCAAGCCGTGGAGCTGCGGGGTAAAAAATGAAGATGGTTTTCAGAGATTTACTGGAATGAAAGTGCCAAATACTACATATTCTTGGGTTAATGAAAGTATGACACTTAATGAATGCGAGGCCAAATGCTTGGAAAACTGTTCCTGCACAGCTTATGCAAACACTGACACAAGTGGAGAGGGTAGTGGTTGTTCCATCTGGTTTGGTGATCTTATTGATTTGAGAGTTTCACAAAGTGGGCAAGATCTATATGTTCGAATGGCAGTTTCAGTTACGGATGCTAAAAATGGGCATAAGAAAAAAGTAGCGTTGGTGGTTACGTTCACTGTTTTATTTGTCCTTGTTATGCTATTGGGGTTCTCCTACAGATACATTACCAAAACAAAGTATAGAGATGAAACAGAGAAAACCATGCTGACAGAAGAGAAACATGAACGTGGACAAGAAGATTTGGAGCTTCCTTTATTTGATCTTGCCACAATAGTTAATGCCACGGATAACTTCTCAACTGACAACAAGCTCGGGGAAGGTGGTTTTGGGCCTGTATACAAGGGTACATTGGTAGACGGACAAGAAATTGCTGTCAAAAGGCTTTCGAGGAGTTCTGGACAAGGATCGGAAGAATTTAAAAATGAAGTTATATTGTGTGCCAAACTTCAGCATAGAAATCTTGTAAAGGTTCTTGGTTGTTGCATTGAAGGAGATGAGAAAATGCTAGTTTATGAATACATGCCCAACAGAAGCCTCGATTTATTTCTTTTCGATTCAGCTCAAAGTAAGCTTCTAAATTGGTCCAAGCGCTTTAACATCTTGAATGCAATTGCTCGGGGGATTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATACACAGAGATTTAAAAGTAAGTAATATTTTATTAGACCATGACATGAATGCCAAAATTTCCGATTTTGGCATGGCCAGAATGTTTGGAGGGGATCAAATTGAAGGGAATACAAAAAGAATAGTTGGGACATACGGTTATATGGCACCTGAATATGCCATTGATGGATTATTCTCCATAAAATCCGATGTATTCAGCTTTGGCGTATTATTGCTAGAAATTGTAAGCGGAAAGAAAAACAGAGCACTTACCTACCATGACGATGATTATAACCTTATTGGGCATGCATGGAGATTATGGAAAGACGGCATTCCAGAACAATTGATTGATGATTGTTTGAGAGATTCGTATATTCTATCTGAAGTTTTTCGCTGCATTCAAATTGGTCTTTTATGTCTGCAACATCATCCTGACGATAGGCCAAACATGACATCTGTGATTGTGATGTTGAGTAGTGTAAATGCTTTACCTCAACCAAACGAACCTGGCTTCTTAATTAAAAAGGCCTCAAGTGAAGGGGAACATTCTTCTTCGGTCAATGGAGTAACTATCTCATTACTAAATGCTAGATAG 2430 0.3914 MLVIFMLLFFFFHMTYAVDTITQFQSLPDNGSTLVSKDGTFELGFFNPGSSSNRYVGIWYKNIPVRTVVWVANRDNPIKDNSSQLIISKEGNLVLLSQNQTLLWSTNSTTEALSPIVQLLDTGNLVLRDEKDNNNETSFLWQSFDHPCDTILPGMKIGWDLKTGLNRRLTAWKNWDDPSSGDFTSSMVLGGNTEMVVWKGSDEYYRTGPMNGLMSSGIFGLKANPLYDYKFVKNEDEVYYIFTLKNSSVISIIVLNQTLYLRQRLIWIPDTRTWRVYQSLPQDSCDIYNTCGPNGNCIISGSPICQCFEGFEPKSPQQWNAIDWTQGCVRSKPWSCGVKNEDGFQRFTGMKVPNTTYSWVNESMTLNECEAKCLENCSCTAYANTDTSGEGSGCSIWFGDLIDLRVSQSGQDLYVRMAVSVTDAKNGHKKKVALVVTFTVLFVLVMLLGFSYRYITKTKYRDETEKTMLTEEKHERGQEDLELPLFDLATIVNATDNFSTDNKLGEGGFGPVYKGTLVDGQEIAVKRLSRSSGQGSEEFKNEVILCAKLQHRNLVKVLGCCIEGDEKMLVYEYMPNRSLDLFLFDSAQSKLLNWSKRFNILNAIARGILYLHQDSRLRIIHRDLKVSNILLDHDMNAKISDFGMARMFGGDQIEGNTKRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNRALTYHDDDYNLIGHAWRLWKDGIPEQLIDDCLRDSYILSEVFRCIQIGLLCLQHHPDDRPNMTSVIVMLSSVNALPQPNEPGFLIKKASSEGEHSSSVNGVTISLLNAR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4513g00001 809 Gene3D Hepatocyte Growth Factor 335 419 - -
Gabi4513g00001 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 144 - -
Gabi4513g00001 809 Pfam Domain of unknown function (DUF3403) 774 809 IPR021820 GO:0004674
Gabi4513g00001 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 178 IPR036426 -
Gabi4513g00001 809 SMART ntp_6 339 417 IPR003609 -
Gabi4513g00001 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Gabi4513g00001 809 CDD PAN_AP_plant 335 418 - -
Gabi4513g00001 809 ProSiteProfiles EGF-like domain profile. 281 317 IPR000742 -
Gabi4513g00001 809 Gene3D Phosphorylase Kinase; domain 1 456 573 - -
Gabi4513g00001 809 SMART serkin_6 498 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4513g00001 809 PIRSF SRK 1 809 IPR024171 GO:0004674
Gabi4513g00001 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 573 - -
Gabi4513g00001 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 777 - -
Gabi4513g00001 809 Pfam S-locus glycoprotein domain 205 315 IPR000858 GO:0048544
Gabi4513g00001 809 ProSiteProfiles PAN/Apple domain profile. 336 418 IPR003609 -
Gabi4513g00001 809 Pfam PAN-like domain 336 404 IPR003609 -
Gabi4513g00001 809 Gene3D - 13 144 IPR036426 -
Gabi4513g00001 809 Pfam Protein tyrosine and serine/threonine kinase 500 766 IPR001245 GO:0004672|GO:0006468
Gabi4513g00001 809 SUPERFAMILY Protein kinase-like (PK-like) 481 783 IPR011009 -
Gabi4513g00001 809 ProSiteProfiles Protein kinase domain profile. 498 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4513g00001 809 ProSiteProfiles Bulb-type lectin domain profile. 18 140 IPR001480 -
Gabi4513g00001 809 CDD B_lectin 30 147 IPR001480 -
Gabi4513g00001 809 Gene3D Transferase(Phosphotransferase) domain 1 574 780 - -
Gabi4513g00001 809 Pfam D-mannose binding lectin 67 173 IPR001480 -
Gabi4513g00001 809 CDD STKc_IRAK 504 769 - -
Gabi4513g00001 809 SMART blect_4 25 147 IPR001480 -
Gabi4513g00001 809 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4513g00001 Gabi-Chr4513 54795 58746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4513g00001 445 791 Receptor kinase-like Gene Family AT3G45860 54.701 1.05e-126 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4513g00001 PK_Tyr_Ser-Thr 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4513g00001 - - gmx:100790436 1225.69