Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00089 ATGGCGGACACCGACGGTGATGGCAATGGCGTCTTCTATCTTCACGGTGACCTTGACTTGAAAATCATCGAGGCTCGCAGGTTGCCTAACATGGACCTCGTCTCCGAGCGTTTCCGCCGTTGCATCACCGCCTGCGACACTATCAAATTCCACTCCTCCGACACCGAACCTTCCGCCTCCACGGACAGGAGCGGCCGCCGAACCCACCACCGCAGAAAGATTATCACCAGCGACCCGTACGTCACCGTTTCGGTGCCGCAGTCAACCGTGGCACGCACGCGCGTGCTCAAGAATGCGCAGAACCCTCGCTGGGACGAGCGCTTCAATATCCCCCTGGCGCACCCGGTCGATGATTTGGAATTCCGCGTCAAAGACGACGACATTTTCGGTGCCCAGACAATTGGCACTGTTAAGATTCCGGCACAGGATATTGCCGCTGGCAAGATGATTTCCGGCTGGTTCCCGGTAATTGGCCCCTCCGGTAAGCCGCCAAAGCCGGAAACCGCGCTACACATTGAGATGTTGTTCACATCGGTGAACGATAACCCGCTTTACCGGCTAGGCATTGCGGCGGATCCCGAACACAGGGGCGTGAGACACACGTATTTTCCGTTGAGGAAGGGAAGCTCGGTGAGGTTGTACCAAGATGCACATTGTCACGATGAGACAGTACCGGAGATTCAGCTCGATGGTGGAAAAGTTTATAGGCAGGAAAAGTGCTGGGAAGATATCTGTTATGCTATATCTGAGGCTCATCACATGGTGTATCTCGTGGGTTGGTCAATTTATCACAAGGTGAAGCTTGTTAGGGAGCCAACTAAGCCTTTGCCAAGAGGTGGAGATTTGACGCTTGGTGAGTTGCTTAAGTACAAGTCTGAAGAAGGGGTGAGAGTTTTGTTGCTTGTTTGGGATGATAAGACTTCACACGATAAGTTCTTCTTCAAGACGGCCGGTGTGATGCAGACTCATGATGAGGAAACGAGGAAGTTTTTTAAACATTCTTCTGTTATGTGTGTTCTAGCACCTCGCTACGCTAGCAGCAAGTTGAGCTTCTTGAAGCAACAGGTTGTTGGAAACGTCTTCACACACCACCAAAAATGTGTTATTGTGGATACACAGGCTGCTGGAAATGACCGAAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGCGATGGTCGCTATGACACACCTAAGCATCGACTTTTTCATGATCTTGACACTGTATTTTCTGGTGATTTCCACAATCCTACTTTTCCTTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATCTGCACTGCAGAATAGATGGACCTGCAGCATATGATGTTCTTTTGAATTTTGAGCAGCGATGGAGAAAAGCAACTAGGTGGAAAGAGTTTACAATTCTTTTCAAAAAATCTTCTCAGTGGCATGATGATTCTTTATTAAAAATCGAACGCATCTCATGGATATTAAGTCCTTCCCATCCTACCTCAAAGGCTAAAAATACAAATGTGCCAGGGGATGACCCTTTAGTATGGGTTTCTAATGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTTCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAAAATGTTGATGTAGCTTTGTCTAAGAATCTTATTTGTTCTAAAAATTTGGTAATAGACAAAAGCATTCAAACAGGATACATTCAAGCGATCAGATCTGCTCAGCACTTCATTTATATTGAAAACCAATACTTTATCGGATCATCATATGCATGGCCGTCTTATAAAGATGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCGCTGAAAATTGCTAATAAAATCAGAGCTAAGGAAAGATTTGCTGTTTATGTTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAATCTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAGACAATGCAAATGATGTATGATGTTGTTGCTAGAGAATTGAAATCAATGCAAATTACCGACGTGCACCCACAAGATTACCTCAACTTCTATTGCCTTGGTAATCGGGAAGACTTTGATGAAGAAACCTCAAGCTCCAATGGTGCACAGGTCTCTGGAGCATATAAATATCGCCGATTTATGATTTATGTGCATGCCAAGGGGATGATCGTTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACCGAGATAGCTATGGGTGCATATCAACCCCATCACACATGGTCTGCGAAGAAAAGACACCCACGTGGCCAGATTTATGGTTACAGAATGTCACTTTGGAGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAGGAACCAGGGAGATTGGAGTGTGTGCGTAAAGTGAATGCAATTGCAGACAATAATTGGAGACTATACACTTCCGAAGATTTCTCACTGCTGCAGGGACATATTCTTAAGTATCCTATACAGGTAGATTCCGATGGGAAGGTTAGCTCCCTACCTGAATGTGAGAATTTCCCAGATGCTGGCGGTAAGATATTGGGGAGTCAGTCCACAGCAATTCCAGATATCCTAACAACATAG 2583 0.4553 MADTDGDGNGVFYLHGDLDLKIIEARRLPNMDLVSERFRRCITACDTIKFHSSDTEPSASTDRSGRRTHHRRKIITSDPYVTVSVPQSTVARTRVLKNAQNPRWDERFNIPLAHPVDDLEFRVKDDDIFGAQTIGTVKIPAQDIAAGKMISGWFPVIGPSGKPPKPETALHIEMLFTSVNDNPLYRLGIAADPEHRGVRHTYFPLRKGSSVRLYQDAHCHDETVPEIQLDGGKVYRQEKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPTKPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKFFFKTAGVMQTHDEETRKFFKHSSVMCVLAPRYASSKLSFLKQQVVGNVFTHHQKCVIVDTQAAGNDRKITAFIGGLDLCDGRYDTPKHRLFHDLDTVFSGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDVLLNFEQRWRKATRWKEFTILFKKSSQWHDDSLLKIERISWILSPSHPTSKAKNTNVPGDDPLVWVSNEDDPENWHVQIFRSIDSGSLKGFPKNVDVALSKNLICSKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIANKIRAKERFAVYVVLPMWPEGDPKSGAMQEILFWQGQTMQMMYDVVARELKSMQITDVHPQDYLNFYCLGNREDFDEETSSSNGAQVSGAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHHTWSAKKRHPRGQIYGYRMSLWREHLGMLDETFEEPGRLECVRKVNAIADNNWRLYTSEDFSLLQGHILKYPIQVDSDGKVSSLPECENFPDAGGKILGSQSTAIPDILTT 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00089 860 ProSiteProfiles C2 domain profile. 1 154 IPR000008 -
Gabi4511g00089 860 FunFam Phospholipase D delta 231 475 - -
Gabi4511g00089 860 SMART pld_4 705 732 IPR001736 GO:0003824
Gabi4511g00089 860 SMART pld_4 359 394 IPR001736 GO:0003824
Gabi4511g00089 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 705 732 IPR001736 GO:0003824
Gabi4511g00089 860 Pfam PLD-like domain 564 742 IPR025202 -
Gabi4511g00089 860 Gene3D Endonuclease Chain A 226 479 - -
Gabi4511g00089 860 Gene3D Endonuclease Chain A 524 756 - -
Gabi4511g00089 860 Pfam Phospholipase D C terminal 779 849 IPR024632 -
Gabi4511g00089 860 SUPERFAMILY Phospholipase D/nuclease 557 782 - -
Gabi4511g00089 860 PANTHER PHOSPHOLIPASE D 11 850 IPR015679 -
Gabi4511g00089 860 MobiDBLite consensus disorder prediction 52 72 - -
Gabi4511g00089 860 CDD C2_plant_PLD 10 177 - -
Gabi4511g00089 860 PIRSF PLD_plant 4 860 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi4511g00089 860 Gene3D C2 domain 15 184 IPR035892 -
Gabi4511g00089 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Gabi4511g00089 860 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 178 IPR035892 -
Gabi4511g00089 860 SUPERFAMILY Phospholipase D/nuclease 201 471 - -
Gabi4511g00089 860 SMART C2_3c 17 153 IPR000008 -
Gabi4511g00089 860 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Gabi4511g00089 860 Pfam C2 domain 16 156 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00089 Gabi-Chr4511 793828 804561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00089 11 696 Phospholipase D Gene Family (Wang group) AT4G35790 71.948 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00089 K01115 - gmx:100814486 1523.45