Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00088 ATGGCGGACACCGACGGTGATGGCAATGGCGTCTTCTATCTTCACGGTGACCTTGACTTGAAAATCATCGAGGCTCGCAGGTTGCCTAACATGGACCTCGTCTCCGAGCGTTTCCGCCGTTGCATCACCGCCTGCGACACTATCAAATTCCACTCCTCCGACACCGAACCTTCCGCCTCCACGGACAGGAGCGGCCGCCGAACCCACCACCGCAGAAAGATTATCACCAGCGACCCGTACGTCACCGTTTCGGTGCCGCAGTCAACCGTGGCACGCACGCGCGTGCTCAAGAATGCGCAGAACCCTCGCTGGGACGAGCGCTTCAATATCCCCCTGGCGCACCCGGTCGATGATTTGGAATTCCGCGTCAAAGACGACGACATTTTCGGTGCCCAGACAATTGGCACTGTTAAGATTCCGGCACAGGATATTGCCGCTGGCAAGATGATTTCCGGCTGGTTCCCGGTAATTGGCCCCTCCGGTAAGCCGCCAAAGCCGGAAACCGCGCTACACATTGAGATGTTGTTCACATCGGTGAACGATAACCCGCTTTACCGGCTAGGCATTGCGGCGGATCCCGAACACAGGGGCGTGAGACACACGTATTTTCCGTTGAGGAAGGGAAGCTCGGTGAGGTTGTACCAAGATGCACATTGTCACGATGAGACAGTACCGGAGATTCAGCTCGATGGTGGAAAAGTTTATAGGCAGGAAAAGTGCTGGGAAGATATCTGTTATGCTATATCTGAGGCTCATCACATGGTGTATCTCGTGGGTTGGTCAATTTATCACAAGGTGAAGCTTGTTAGGGAGCCAACTAAGCCTTTGCCAAGAGGTGGAGATTTGACGCTTGGTGAGTTGCTTAAGTACAAGTCTGAAGAAGGGGTGAGAGTTTTGTTGCTTGTTTGGGATGATAAGACTTCACACGATAAGTTCTTCTTCAAGACGGCCGGTGTGATGCAGACTCATGATGAGGAAACGAGGAAGTTTTTTAAACATTCTTCTGTTATGTGTGTTCTAGCACCTCGCTACGCTAGCAGCAAGTTGAGCTTCTTGAAGCAACAGGTTGTTGGAAACGTCTTCACACACCACCAAAAATGTGTTATTGTGGATACACAGGCTGCTGGAAATGACCGAAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGCGATGGTCGCTATGACACACCTAAGCATCGACTTTTTCATGATCTTGACACTGTATTTTCTGGTGATTTCCACAATCCTACTTTTCCTTCTGGAACAAGGGCTCCTAGACAACCGTGGCATGATCTGCACTGCAGAATAGATGGACCTGCAGCATATGATGTTCTTTTGAATTTTGAGCAGCGATGGAGAAAAGCAACTAGGTGGAAAGAGTTTACAATTCTTTTCAAAAAATCTTCTCAGTGGCATGATGATTCTTTATTAAAAATCGAACGCATCTCATGGATATTAAGGGATGACCCTTTAGTATGGGTTTCTAATGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTTCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAAAATGTTGATGTAGCTTTGTCTAAGAATCTTATTTGTTCTAAAAATTTGGTAATAGACAAAAGCATTCAAACAGGATACATTCAAGCGATCAGATCTGCTCAGCACTTCATTTATATTGAAAACCAATACTTTATCGGATCATCATATGCATGGCCGTCTTATAAAGATGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCGCTGAAAATTGCTAATAAAATCAGAGCTAAGGAAAGATTTGCTGTTTATGTTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAATCTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAGACAATGCAAATGATGTATGATGTTGTTGCTAGAGAATTGAAATCAATGCAAATTACCGACGTGCACCCACAAGATTACCTCAACTTCTATTGCCTTGGTAATCGGGAAGACTTTGATGAAGAAACCTCAAGCTCCAATGGTGCACAGGTCTCTGGAGCATATAAATATCGCCGATTTATGATTTATGTGCATGCCAAGGGGATGATCGTTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACCGAGATAGCTATGGGTGCATATCAACCCCATCACACATGGTCTGCGAAGAAAAGACACCCACGTGGCCAGATTTATGGTTACAGAATGTCACTTTGGAGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAGGAACCAGGGAGATTGGAGTGTGTGCGTAAAGTGAATGCAATTGCAGACAATAATTGGAGACTATACACTTCCGAAGATTTCTCACTGCTGCAGGGACATATTCTTAAGTATCCTATACAGGTAGATTCCGATGGGAAGGTTAGCTCCCTACCTGAATGTGAGAATTTCCCAGATGCTGGCGGTAAGATATTGGGGAGTCAGTCCACAGCAATTCCAGATATCCTAACAACATAG 2538 0.4555 MADTDGDGNGVFYLHGDLDLKIIEARRLPNMDLVSERFRRCITACDTIKFHSSDTEPSASTDRSGRRTHHRRKIITSDPYVTVSVPQSTVARTRVLKNAQNPRWDERFNIPLAHPVDDLEFRVKDDDIFGAQTIGTVKIPAQDIAAGKMISGWFPVIGPSGKPPKPETALHIEMLFTSVNDNPLYRLGIAADPEHRGVRHTYFPLRKGSSVRLYQDAHCHDETVPEIQLDGGKVYRQEKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPTKPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKFFFKTAGVMQTHDEETRKFFKHSSVMCVLAPRYASSKLSFLKQQVVGNVFTHHQKCVIVDTQAAGNDRKITAFIGGLDLCDGRYDTPKHRLFHDLDTVFSGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDVLLNFEQRWRKATRWKEFTILFKKSSQWHDDSLLKIERISWILRDDPLVWVSNEDDPENWHVQIFRSIDSGSLKGFPKNVDVALSKNLICSKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIANKIRAKERFAVYVVLPMWPEGDPKSGAMQEILFWQGQTMQMMYDVVARELKSMQITDVHPQDYLNFYCLGNREDFDEETSSSNGAQVSGAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHHTWSAKKRHPRGQIYGYRMSLWREHLGMLDETFEEPGRLECVRKVNAIADNNWRLYTSEDFSLLQGHILKYPIQVDSDGKVSSLPECENFPDAGGKILGSQSTAIPDILTT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00088 845 ProSiteProfiles C2 domain profile. 1 154 IPR000008 -
Gabi4511g00088 845 Gene3D C2 domain 15 184 IPR035892 -
Gabi4511g00088 845 SUPERFAMILY Phospholipase D/nuclease 201 470 - -
Gabi4511g00088 845 SUPERFAMILY Phospholipase D/nuclease 542 768 - -
Gabi4511g00088 845 Pfam Phospholipase D C terminal 764 834 IPR024632 -
Gabi4511g00088 845 SMART pld_4 690 717 IPR001736 GO:0003824
Gabi4511g00088 845 SMART pld_4 359 394 IPR001736 GO:0003824
Gabi4511g00088 845 Gene3D Endonuclease Chain A 509 741 - -
Gabi4511g00088 845 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Gabi4511g00088 845 CDD C2_plant_PLD 10 177 - -
Gabi4511g00088 845 FunFam Phospholipase D delta 231 475 - -
Gabi4511g00088 845 Pfam PLD-like domain 549 727 IPR025202 -
Gabi4511g00088 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Gabi4511g00088 845 SMART C2_3c 17 153 IPR000008 -
Gabi4511g00088 845 PANTHER PHOSPHOLIPASE D 11 835 IPR015679 -
Gabi4511g00088 845 Gene3D Endonuclease Chain A 226 479 - -
Gabi4511g00088 845 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 178 IPR035892 -
Gabi4511g00088 845 PIRSF PLD_plant 4 845 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi4511g00088 845 MobiDBLite consensus disorder prediction 52 71 - -
Gabi4511g00088 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 690 717 IPR001736 GO:0003824
Gabi4511g00088 845 Pfam C2 domain 16 156 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00088 Gabi-Chr4511 793828 804561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00088 11 681 Phospholipase D Gene Family (Wang group) AT4G35790 71.366 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00088 K01115 - gmx:100814486 1508.81