Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00087 ATGGCGGATTCTCCACTAAGAAGGAATTCAAGGTCCCCTTCTCCATACAGAGCTCAATCATTGTCAAGATCCAGGTCAAGATCTAGATCTAGGCCTATGTCTAGGTCTCGATCTCGGTCAAGGTCTTTTGAAAAGCAAAGGCCTAGATCCCGTTCGAGAAGCCGGGGCAGATCAAGATCTAGAAGTCCTGAAAGGTCTGAGACTAAAAATCCTGGGTTTACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAAGTTGCTTCATGTTTTCTGGTGATGGAGCCTCGTACACGTATTTCTCGTGGTTTTGCTTTTATTACAATGGATTCTGTTGAGGATGCAAACCGCTGTATCAAGTATCTCAATCAATCAGTTCTGGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGGCCAAGAACTCCTACACCTGGACACTATCTTGGGCTGAAAAGTACTAGAGACTATGGACATCGTGGTGACCGTGGAAGGTATCGAGGTGGATCTAGTCGTGATGATTATCCATATAGTAGGTCTCCAAGGCGCTCTTCATATCGAGGTGGCAGGGATTATTCACCTAGGCACTCGCCCTATGGTGGAAGATCTAGGAGGGATAGGTCTTATTCGCCATATGGTAGCCCAGATAGAAGGTATGCTCGTGGATCTAGGTGA 717 0.4672 MADSPLRRNSRSPSPYRAQSLSRSRSRSRSRPMSRSRSRSRSFEKQRPRSRSRSRGRSRSRSPERSETKNPGFTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVMEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGHRGDRGRYRGGSSRDDYPYSRSPRRSSYRGGRDYSPRHSPYGGRSRRDRSYSPYGSPDRRYARGSR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00087 238 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 66 232 - -
Gabi4511g00087 238 SUPERFAMILY RNA-binding domain, RBD 66 183 IPR035979 GO:0003676
Gabi4511g00087 238 MobiDBLite consensus disorder prediction 1 74 - -
Gabi4511g00087 238 CDD RRM_SF 75 147 - -
Gabi4511g00087 238 MobiDBLite consensus disorder prediction 148 238 - -
Gabi4511g00087 238 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4511g00087 238 SMART rrm1_1 74 147 IPR000504 GO:0003723
Gabi4511g00087 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Gabi4511g00087 238 MobiDBLite consensus disorder prediction 167 204 - -
Gabi4511g00087 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Gabi4511g00087 238 Gene3D - 10 158 IPR012677 -
Gabi4511g00087 238 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00087 Gabi-Chr4511 787889 790522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00087 46 155 Eukaryotic Initiation Factors Gene Family AT1G49760 29.091 1.88e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00087 K12897 - gmx:100527350 282.337