Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00057 ATGGGCAACCAGAGCCTAACAATAGGGTTATCTCTGAACAACCTCCATGCATTTCTTGATGCAAATAAAGATAAAATAGATTTTGGAAATGCAAGGGAATTGTCATTTCCTGCAACTAAATGCCTGGAGAAACTTTTAAAATTTGGGCCTTACTATGTGACTCCAGATGTGATGGGATCCGCCAACCTTGAAGAGAGGGACTTCCCGTTGATTGATAAATGGTTAGAAAAGTTTGTTGTGGAAGGCTCTGATACCATTGATAATGTGAAAACCAAGATCCAGGACAAAGAGGGTATCCCTCCAGATCAGCAGAGGCTGGTTTTTGCTGGCAAGCAACTTGAAGATGGAAGAACCCTTGCTGATTATAACATTCAGAAGGAATCCACTCTGCACTTGGTTCTACGTCTTCGTGGGGGGATGCAAATCTTTGTTAAGACTTTAACTGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACCATCGATAATGTGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCACCGGACCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGATGATGGATGTACCCTTGCTGATTATAATATCCAGAAGGAATGTACTCTGCACTTGGTTTTGCGGCTTCGTGGTGGTATGCAAATATTTGTGAAGACCCTAACGGGTAAGACTATCACATTGGAGGTGGAAAGCTCTGAGTGTAAAGAACCAATTATTACATGGAACCCATTTCAAGGCATAAATCTTCCTGAGTCTTACCCGCAGAAGCATGGGTTGGATACAACCCATAATTGCAAGGCCATGAAACTCCTTAAGCAGCGTAGAAGGGGGAGAAGAAGTGGTCTCTGTTATGATTGGTTAAGAAAAAACTGA 882 0.4297 MGNQSLTIGLSLNNLHAFLDANKDKIDFGNARELSFPATKCLEKLLKFGPYYVTPDVMGSANLEERDFPLIDKWLEKFVVEGSDTIDNVKTKIQDKEGIPPDQQRLVFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGCTLADYNIQKECTLHLVLRLRGGMQIFVKTLTGKTITLEVESSECKEPIITWNPFQGINLPESYPQKHGLDTTHNCKAMKLLKQRRRGRRSGLCYDWLRKN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00057 293 ProSitePatterns Ubiquitin domain signature. 166 191 IPR019954 -
Gabi4511g00057 293 CDD Ubl_ubiquitin 140 215 - -
Gabi4511g00057 293 ProSiteProfiles Ubiquitin domain profile. 80 139 IPR000626 GO:0005515
Gabi4511g00057 293 SMART ubq_7 68 135 IPR000626 GO:0005515
Gabi4511g00057 293 SMART ubq_7 140 211 IPR000626 GO:0005515
Gabi4511g00057 293 ProSitePatterns Ubiquitin domain signature. 90 115 IPR019954 -
Gabi4511g00057 293 ProSiteProfiles Ubiquitin domain profile. 140 215 IPR000626 GO:0005515
Gabi4511g00057 293 Pfam Ubiquitin family 142 213 IPR000626 GO:0005515
Gabi4511g00057 293 Pfam Ubiquitin family 80 137 IPR000626 GO:0005515
Gabi4511g00057 293 FunFam Polyubiquitin Ubiquitin 140 215 - -
Gabi4511g00057 293 SUPERFAMILY Ubiquitin-like 139 215 IPR029071 -
Gabi4511g00057 293 FunFam Polyubiquitin-C 216 238 - -
Gabi4511g00057 293 Gene3D - 140 215 - -
Gabi4511g00057 293 Gene3D - 76 139 - -
Gabi4511g00057 293 Gene3D - 216 239 - -
Gabi4511g00057 293 PANTHER UBIQUITIN 216 236 - -
Gabi4511g00057 293 SUPERFAMILY Ubiquitin-like 76 139 IPR029071 -
Gabi4511g00057 293 PRINTS Ubiquitin signature 192 213 IPR019956 -
Gabi4511g00057 293 PRINTS Ubiquitin signature 150 170 IPR019956 -
Gabi4511g00057 293 PRINTS Ubiquitin signature 171 191 IPR019956 -
Gabi4511g00057 293 FunFam Polyubiquitin-C 75 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00057 Gabi-Chr4511 495078 496508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00057 140 216 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 4.70e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00057 K08770 - sspl:121761454 298.13