Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00054 ATGGGTACCAGAAAGGTTGTGCAGACCAGAAGAGCGTTAAGTGTAATAAATCAGAATCTGGTGGAAGATCGACGTTACCCTTGCGTTGTTAACAAGAGGGTTTTGTCAGAAAAACATGATGTTTGTGAAAAGAAGCAGGCGGATCCAGTGCATCGACCCATCAGTCGATGTGAACAGGAAACCAAGAGGTCAGACTTGACAATTTCAAATTCGAATGGATTTGGAGAGTGTATATTTATCGATGATGAACACAAGCCAAGGGAAGACCAGCCAGTGCCCATGTTTTTAGAAGGGCATAGTGAACCAGATCAGATGGATGAAATTCAGATGGAGGATATAATTGAAGAGCCTGTTTTGGACATTGATGTCTGTGATGCAAATAATCCTCTTGCAGTGGTGGACTACATTGAAGATCTTTTTACCAACTACAGAAAAAACGAGAGGACTAGCTGTGTCTCACCGAATTATATGGCACAACAACCTGACATTAATGGAAGGATGAGGGCTATACTGATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTTACGGTTAATGTTATAGACAGATTTTTGGAGAAGTCTACAGTGGTAAGAAAGAAGCTTCAGTTGGTGGGTCTGGTTGCCATGCTTTTGGCATGCAAGTATGAGGAAGTCTCACTACCTGTGGTTGGGGATCTAATTCTGATATCAGACAAAGCATATACAAGGAAGGAAGTTCTGGAAATGGAGAAGTTGATGGTCAATACATTGCAGTTTAAAATGTCTGTGCCAACAGCATATGTTTTTATAAGAAGGTTCCTAAAGGCAGCTCAAGCAAATAGAAAACTTGAGCTACTAGCTTTCTTCTTGGTGGAGCTATCTCTAGTGGAATATGAGATGGTGAAGTTCCCTCCATCTCAACTAGCTGCAGCTGCAGTTTACACGGCTCAATGCAGTATCCATGGTTTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTATTCAGAAGATCAGCTATTAGAGTGCTCTAGTTTAATAGTTGATTTTCACCAGAAGGCTGGGACAGGGAAACTTACAGGGGTACATAGGAAGTACTGCTCATCTAAACATAGCTATACTGCAAGATGTGAACCAGCACTTTTTCTTCTGGAGAACCCATTGTAG 1176 0.4175 MGTRKVVQTRRALSVINQNLVEDRRYPCVVNKRVLSEKHDVCEKKQADPVHRPISRCEQETKRSDLTISNSNGFGECIFIDDEHKPREDQPVPMFLEGHSEPDQMDEIQMEDIIEEPVLDIDVCDANNPLAVVDYIEDLFTNYRKNERTSCVSPNYMAQQPDINGRMRAILIDWLIEVHDKFDLMHETLFLTVNVIDRFLEKSTVVRKKLQLVGLVAMLLACKYEEVSLPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFKMSVPTAYVFIRRFLKAAQANRKLELLAFFLVELSLVEYEMVKFPPSQLAAAAVYTAQCSIHGFKQWSKTCEWHTNYSEDQLLECSSLIVDFHQKAGTGKLTGVHRKYCSSKHSYTARCEPALFLLENPL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00054 391 SUPERFAMILY Cyclin-like 265 381 IPR036915 -
Gabi4511g00054 391 ProSitePatterns Cyclins signature. 168 199 IPR006671 -
Gabi4511g00054 391 SMART cyclin_7 173 257 IPR013763 -
Gabi4511g00054 391 SMART cyclin_7 270 352 IPR013763 -
Gabi4511g00054 391 PANTHER CYCLINS 86 356 IPR039361 -
Gabi4511g00054 391 Pfam Cyclin, N-terminal domain 138 264 IPR006671 -
Gabi4511g00054 391 FunFam G2/mitotic-specific cyclin-1 260 378 - -
Gabi4511g00054 391 SUPERFAMILY Cyclin-like 127 263 IPR036915 -
Gabi4511g00054 391 SMART Cyclin_C_2 266 383 IPR004367 -
Gabi4511g00054 391 Pfam Cyclin, C-terminal domain 266 378 IPR004367 -
Gabi4511g00054 391 CDD CYCLIN_AtCycB-like_rpt1 115 261 - -
Gabi4511g00054 391 Gene3D - 138 376 - -
Gabi4511g00054 391 Gene3D - 152 264 - -
Gabi4511g00054 391 CDD CYCLIN_AtCycB-like_rpt2 266 382 - -
Gabi4511g00054 391 FunFam G2/mitotic-specific cyclin 152 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00054 Gabi-Chr4511 474565 477865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00054 9 387 Core Cell Cycle Gene Families AT1G20610 58.500 2.72e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00054 K21777 - gmx:100798068 624.78