Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00052 ATGGGAGGTGACGCTGCAGCTGAGGGTGCGACGGAGCCTAAAGCCGCCGAGGTCAACATCAACATTCGCTGCTCCAATGGTTCTAAGTTTTCCGTTCTGATTAGCCTCGAATCCACCGTCGGATCCTTCAAGGATGCTGTCGCTCGGAACTGCGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGAGGATCAAACCCTCCAAAGCTACGGTTTGGAGTCAGATCACACTGTACATTTGGTTCGTGGCTTTGCGCCTTCCAATACAACTGGTGGAACTAATACTACTGGTGCCAATACCACAACAACCAATACGAGAGGTGTTGGTGCTAATGAGGGTGGAGGTTTAGGAGGGCCTGGATTTGGAGCTTCACTGTTCCCTGGACCAGGGATCAATGGGACGGGGAACAGTGGTCTCAATGGCTTATTTGGAGCGGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCTAATATAGTGAGAGAAATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTTATGGATAGAAACCCTGAGCTGGCACACATACTAAATGATCCCAGCACTCTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGAAATACAGGAAATGATAGTGCAGCAATTTTGGGAACTCAAGGTGGCCAAATCAGGAACCAATCAACTAATCCCTCGACTACTGGTTCTGAAACAACTTCCCCTATACCAAATACTAACCCGCTTCCTAATCCTTGGTCCGCTACTGGAACTGGAGGTGCCGAAGGTAACACCAGAAGGTCAACTACTGGTGGGGATGCTCGACAGCAGACACCAACTGGTTTAGGAGGGCTTGGTCTGCCAGATCTTGAAGGTATGATGGGTGGTATGCCGGATGCTGCTTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGTCAATGCTGAGCAGCGTGGTATGCCTGATTTAAATTCTCTGAGAGAAGTGATGCAAAACCCAGAGTTCCTTCGCTTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGATCTTTGAACAACATGGGGTTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCGAACAGATCAAATGAGCCGCCAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTGTTGCCACATCAGGGAATGTTCACGCAGCAGTTGAGCGGCTTTTGGGGAACACTGGACAGTAG 1623 0.4732 MGGDAAAEGATEPKAAEVNINIRCSNGSKFSVLISLESTVGSFKDAVARNCDIPADQQRLIYKGRILKEDQTLQSYGLESDHTVHLVRGFAPSNTTGGTNTTGANTTTTNTRGVGANEGGGLGGPGFGASLFPGPGINGTGNSGLNGLFGAGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDSAAILGTQGGQIRNQSTNPSTTGSETTSPIPNTNPLPNPWSATGTGGAEGNTRRSTTGGDARQQTPTGLGGLGLPDLEGMMGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNTGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00052 540 CDD UBA_PLICs 498 536 - -
Gabi4511g00052 540 CDD Ubl_Dsk2p_like 18 90 - -
Gabi4511g00052 540 SMART ubq_7 18 89 IPR000626 GO:0005515
Gabi4511g00052 540 Gene3D - 480 540 - -
Gabi4511g00052 540 MobiDBLite consensus disorder prediction 90 112 - -
Gabi4511g00052 540 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Gabi4511g00052 540 Gene3D - 191 249 - -
Gabi4511g00052 540 SMART uba_6 498 536 IPR015940 -
Gabi4511g00052 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Gabi4511g00052 540 FunFam Ubiquitin domain-containing protein DSK2b 193 249 - -
Gabi4511g00052 540 SMART CBM 142 183 IPR006636 -
Gabi4511g00052 540 SMART CBM 399 434 IPR006636 -
Gabi4511g00052 540 SMART CBM 345 396 IPR006636 -
Gabi4511g00052 540 SMART CBM 196 235 IPR006636 -
Gabi4511g00052 540 FunFam Ubiquitin domain-containing protein DSK2b 15 101 - -
Gabi4511g00052 540 MobiDBLite consensus disorder prediction 279 351 - -
Gabi4511g00052 540 PANTHER UBIQUILIN 14 535 IPR015496 -
Gabi4511g00052 540 FunFam Ubiquitin domain-containing protein DSK2b 481 539 - -
Gabi4511g00052 540 MobiDBLite consensus disorder prediction 279 344 - -
Gabi4511g00052 540 MobiDBLite consensus disorder prediction 446 467 - -
Gabi4511g00052 540 Gene3D - 7 102 - -
Gabi4511g00052 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Gabi4511g00052 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Gabi4511g00052 540 SUPERFAMILY Ubiquitin-like 10 103 IPR029071 -
Gabi4511g00052 540 Pfam Ubiquitin family 20 87 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00052 Gabi-Chr4511 426991 432688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00052 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.19e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00052 K04523 - gmx:100797539 830.091