Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4511g00051 | ATGGGAGGTGACGCTGCAGCTGAGGGTGCGACGGAGCCTAAAGCCGCCGAGGTCAACATCAACATTCGCTGCTCCAATGGTTCTAAGTTTTCCGTTCTGATTAGCCTCGAATCCACCGTCGGATCCTTCAAGGATGCTGTCGCTCGGAACTGCGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGAGGATCAAACCCTCCAAAGCTACGGTTTGGAGTCAGATCACACTGTACATTTGGTTCGTGGCTTTGCGCCTTCCAATACAACTGGTGGAACTAATACTACTGGTGCCAATACCACAACAACCAATACGAGAGGTGTTGGTGCTAATGAGGGTGGAGGTTTAGGAGGGCCTGGATTTGGAGCTTCACTGTTCCCTGGACCAGGGATCAATGGGACGGGGAACAGTGGTCTCAATGGCTTATTTGGAGCGGGCTTTCCAGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCTAATATAGTGAGAGAAATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTTATGGATAGAAACCCTGAGCTGGCACACATACTAAATGATCCCAGCACTCTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGAAATACAGGAAATGATAGTGCAGCAATTTTGGGAACTCAAGGTGGCCAAATCAGGAACCAATCAACTAATCCCTCGACTACTGGTTCTGAAACAACTTCCCCTATACCAAATACTAACCCGCTTCCTAATCCTTGGTCCGCTACTGGAACTGGAGGTGCCGAAGGTAACACCAGAAGGTCAACTACTGGTGGGGATGCTCGACAGCAGACACCAACTGGTTTAGGAGGGCTTGGTCTGCCAGATCTTGAAGGTATGATGGGTGGTATGCCGGATGCTGCTTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGCGTGGTATGCCTGATTTAAATTCTCTGAGAGAAGTGATGCAAAACCCAGAGTTCCTTCGCTTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGATCTTTGAACAACATGGGGTTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCGAACAGATCAAATGAGCCGCCAGAGCAATTGTATGCCACCCAACTTTCCCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACATAAGGGCTCTTGTTGCCACATCAGGGAATGTTCACGCAGCAGTTGAGCGGCTTTTGGGGAACACTGGACAGTAG | 1599 | 0.4734 | MGGDAAAEGATEPKAAEVNINIRCSNGSKFSVLISLESTVGSFKDAVARNCDIPADQQRLIYKGRILKEDQTLQSYGLESDHTVHLVRGFAPSNTTGGTNTTGANTTTTNTRGVGANEGGGLGGPGFGASLFPGPGINGTGNSGLNGLFGAGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDSAAILGTQGGQIRNQSTNPSTTGSETTSPIPNTNPLPNPWSATGTGGAEGNTRRSTTGGDARQQTPTGLGGLGLPDLEGMMGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNTGQ | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4511g00051 | 532 | CDD | UBA_PLICs | 490 | 528 | - | - | |
| Gabi4511g00051 | 532 | CDD | Ubl_Dsk2p_like | 18 | 90 | - | - | |
| Gabi4511g00051 | 532 | SMART | ubq_7 | 18 | 89 | IPR000626 | GO:0005515 | |
| Gabi4511g00051 | 532 | SMART | CBM | 142 | 183 | IPR006636 | - | |
| Gabi4511g00051 | 532 | SMART | CBM | 345 | 383 | IPR006636 | - | |
| Gabi4511g00051 | 532 | SMART | CBM | 389 | 426 | IPR006636 | - | |
| Gabi4511g00051 | 532 | SMART | CBM | 196 | 235 | IPR006636 | - | |
| Gabi4511g00051 | 532 | FunFam | Ubiquitin domain-containing protein DSK2b | 473 | 531 | - | - | |
| Gabi4511g00051 | 532 | Pfam | UBA/TS-N domain | 490 | 526 | IPR015940 | - | |
| Gabi4511g00051 | 532 | MobiDBLite | consensus disorder prediction | 90 | 112 | - | - | |
| Gabi4511g00051 | 532 | ProSiteProfiles | Ubiquitin domain profile. | 18 | 87 | IPR000626 | GO:0005515 | |
| Gabi4511g00051 | 532 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 484 | 529 | IPR015940 | - | |
| Gabi4511g00051 | 532 | Pfam | Ubiquitin family | 20 | 87 | IPR000626 | GO:0005515 | |
| Gabi4511g00051 | 532 | Gene3D | - | 191 | 249 | - | - | |
| Gabi4511g00051 | 532 | MobiDBLite | consensus disorder prediction | 279 | 351 | - | - | |
| Gabi4511g00051 | 532 | Gene3D | - | 472 | 532 | - | - | |
| Gabi4511g00051 | 532 | Gene3D | - | 7 | 102 | - | - | |
| Gabi4511g00051 | 532 | PANTHER | UBIQUILIN | 14 | 527 | IPR015496 | - | |
| Gabi4511g00051 | 532 | MobiDBLite | consensus disorder prediction | 279 | 344 | - | - | |
| Gabi4511g00051 | 532 | MobiDBLite | consensus disorder prediction | 438 | 459 | - | - | |
| Gabi4511g00051 | 532 | FunFam | Ubiquitin domain-containing protein DSK2b | 193 | 249 | - | - | |
| Gabi4511g00051 | 532 | SUPERFAMILY | Ubiquitin-like | 10 | 103 | IPR029071 | - | |
| Gabi4511g00051 | 532 | SMART | uba_6 | 490 | 528 | IPR015940 | - | |
| Gabi4511g00051 | 532 | FunFam | Ubiquitin domain-containing protein DSK2b | 15 | 101 | - | - | |
| Gabi4511g00051 | 532 | SUPERFAMILY | UBA-like | 486 | 528 | IPR009060 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4511g00051 | Gabi-Chr4511 | 426981 | 432688 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4511g00051 | 18 | 87 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 30.000 | 1.17e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4511g00051 | K04523 | - | gmx:100797539 | 810.446 |