Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00044 ATGCGACGTCCAAGTTCCAACAACTCACTACTACTTCCAACGCCTGATGCTATAGATTTGGTCAAGTACTTTGATATGCTAATTATAGAAGCATCAAGAATTCTAAATGTTGAGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATCTAGTATTCCCTGCTGGCGTCATAGGAAGATGAAATCACTTGATAGTCTCATTCATGATCTTCAGGAAGAGGCAAAACACCAAGAATTGGAGGACAAGGTTGCTTCCATGGCGGTGACAATGAGGCAAAGAATGTTGGAGAATGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTCAAGCAGGATGTTTTCAAGAGAAGGCACAAAGCTAGAGCTATTGAAATACAGAGTTCTGAAGTTTCCAGCACTTAG 423 0.4043 MRRPSSNNSLLLPTPDAIDLVKYFDMLIIEASRILNVELTVLKRKCRESSIPCWRHRKMKSLDSLIHDLQEEAKHQELEDKVASMAVTMRQRMLENEKENIEKKPFMDIQSETKRFKQDVFKRRHKARAIEIQSSEVSST 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00044 140 ProSiteProfiles RWP-RK domain profile. 1 82 IPR003035 -
Gabi4511g00044 140 PANTHER PROTEIN RKD4 19 130 IPR044607 GO:0003700
Gabi4511g00044 140 Pfam RWP-RK domain 19 62 IPR003035 -
Gabi4511g00044 140 Coils Coil 59 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00044 Gabi-Chr4511 377188 383814 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00044 19 140 AtRKD Transcription Factor Family AT4G35590 58.537 1.07e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi4511g00044 RWP-RK 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00044 - - gmx:100306328 188.734