Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00042 ATGGATTCCTCGCTGACCAACCTACTTGTCTTCAACAACACCATTCAAAGAGAGTTGATCAGGAGCGTGCATGTGTACCGCGAATGTGATGGGGAGGAAAGGGAAGTTGAAAGAGAGTTTGCGTTTTCAGAGAGTGGTTCCTATGAGGAAATGCAGGCTACCCCAATTCTTAGATTGATGAAATTTCGTGTTTCTGAAGTTTATGAAGGGTACCAGAATGGAGTGTGGCTTTGTATCTTTGCATTTCACTTCGATCACACTCCTCAATTTTCTCACATTCCATCGCTATTGTTGGTCACGAGAAACCAGAAGCTTCAGACGATTCCAAATTTGCTTAATGATCTCCATATCATAAGCAAGTTGGACTCGAAGAATGAAGACAAGGATATACCACAAGACTCTGCAAGGGAAGAATGGCAAGGAAACAGCAATGGTTACCAACCATCACAAAAAGTCTTGCCTGTGTTTTATCAGGATCTCAATTGTCTTCCTTATGAAGAAGACGAGTCTGAATTACCAGACAATGAGACAGATGTTGAAAGCTTGCCAGATTTGGTAGAGAAGAAAAAGAGAGCACCCAGTAACCATGTGGCAAAAATTTCTTTATCAGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAATCACTTGATAGTCTCATTCATGATCTTCAGGAAGAGGCAAAACACCAAGAATTGGAGGACAAGGTTGCGGCCATGGCGGTGACAATGAGGCAAAGAATGTTGGAGAATGAAAAGGAAAACATAGAGAAAAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTCAGGCAGGATGTTTTCAAGAGAAGGCACAAAGCTAGAGCTATTGAAAAACAGAGTTCTGAAGTTTCCAGCACTTAG 978 0.4141 MDSSLTNLLVFNNTIQRELIRSVHVYRECDGEEREVEREFAFSESGSYEEMQATPILRLMKFRVSEVYEGYQNGVWLCIFAFHFDHTPQFSHIPSLLLVTRNQKLQTIPNLLNDLHIISKLDSKNEDKDIPQDSAREEWQGNSNGYQPSQKVLPVFYQDLNCLPYEEDESELPDNETDVESLPDLVEKKKRAPSNHVAKISLSDLVKYFDMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQELEDKVAAMAVTMRQRMLENEKENIEKKPFMDIQSETKRFRQDVFKRRHKARAIEKQSSEVSST 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00042 325 PANTHER PROTEIN RKD4 82 317 IPR044607 GO:0003700
Gabi4511g00042 325 MobiDBLite consensus disorder prediction 125 147 - -
Gabi4511g00042 325 Pfam RWP-RK domain 200 247 IPR003035 -
Gabi4511g00042 325 ProSiteProfiles RWP-RK domain profile. 182 267 IPR003035 -
Gabi4511g00042 325 Coils Coil 244 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00042 Gabi-Chr4511 364040 369306 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00042 15 325 AtRKD Transcription Factor Family AT4G35590 50.305 3.69e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi4511g00042 RWP-RK 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00042 - - gmx:100306328 494.582