Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00037 ATGCCGAAGGCTACCACTAACTCCAAACCCGCCGATAACCGGTTGAAGCGCAAGGGAGCTGGAACCGGGAGGAAGCAGTCGAAGAAAGCTGCGAAGGATCCAAACAAGCCGAAGAGGCCTCCAAGCGCTTTCTTCGTTTTCATGTCTGATTTCAGAGAGCAGTTCAAGAAAGAGAATCCAGAGAACAAATCTGTCGCTGTCGTCGGTAAAGCTGGAGGTGGTAAATGGAAATCGCTGTCTGATGCGGAAAAGGCTCCTTACGTTGCTAAGGCAGGCAAGAAGAAAGCGGAGTATGAAAAGACTCTTCGGGCCTACAATACTGCATTGGCTGAGGGCAAAAACCGTTCAGAGGAAGAAGGGTCTGATAAGTCAAAGTCCGAAATCCATGATGAGGACGAAGAGGATGATGAAGAGGATGACGAGTAA 426 0.493 MPKATTNSKPADNRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMSDFREQFKKENPENKSVAVVGKAGGGKWKSLSDAEKAPYVAKAGKKKAEYEKTLRAYNTALAEGKNRSEEEGSDKSKSEIHDEDEEDDEEDDE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00037 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Gabi4511g00037 141 SMART hmgende2 36 107 IPR009071 -
Gabi4511g00037 141 Coils Coil 95 115 - -
Gabi4511g00037 141 Gene3D High mobility group box domain 21 124 IPR036910 -
Gabi4511g00037 141 SUPERFAMILY HMG-box 24 106 IPR036910 -
Gabi4511g00037 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Gabi4511g00037 141 CDD HMG-box_AtHMGB1-like 38 98 - -
Gabi4511g00037 141 MobiDBLite consensus disorder prediction 108 141 - -
Gabi4511g00037 141 MobiDBLite consensus disorder prediction 1 43 - -
Gabi4511g00037 141 MobiDBLite consensus disorder prediction 112 128 - -
Gabi4511g00037 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 139 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00037 Gabi-Chr4511 330930 332112 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi4511g00037 HMG_box 1.3e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00037 K25507 - gmx:100499992 187.963