Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00024 ATGTCTTGCTCATCGTCATCAGGGTCGGAGGAAGATGATGAGGGATTCGACTCTTATCGGAAAGGAGGGTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAATTGGGTTGGGGTCAGTTCTCCACCGTGTGGCTTGCTTACGATACTAACACCTCTGTATGTTTGATCCCTAATCTTCTTCTTTTTGCGGCCCAGTTTGTTCAGTCTGCCCTTCATGAGATCGATGTTCTTTCAACCATTGCTGAAGGTGACCCCTCAAATTCGAAGTATGTTGTCCAATTGATTGACCACTTTAAGCATACAGGTCCAAATGGGCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGTGATAACTTGCTTCGTTTGATCAGATATAACCGTTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCATACTGACCTAAAACCTGAAAACATTCTTCTACTTTCAACCATTGATCTTGCCAAAGACCCTTTTAGATCTGGACTCTCCCCAATTCTAGAGCGGCCTGAGGGAAACACAAATGGTGGATTTTCAAGTCTTATTGAAAAAAAGTTGAAGAGGAGAGCAAGGATGGCAGTTGCTAAGATATCTGGAAGAAGAGACTCAATGGGAGGAACAGGAGAAGCTGCAAAGTCTGGTAGAAATGTTGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCATGTTGGGCTAATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCTGAAGTTATACTGAAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACACCCAAGGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATTCCCCGGAAGATTGCTATTGCTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGGCCACTTGACAAATTGCTGATTGAAAGATATAAGTTTTCAGTAAGTGACGCTCATGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCACCTGAGAAGCGACCAACTGCACAACAATGGCTGCAACACCCATGGCTGAACTGCAAGGAGTCAACTCCAAATGAAATGAGAAATGAATCAACAGTGGAAAAGGTTAACGTTGGGATGAGTAACCTTCAAATCAAAGTGGGAAAGTGA 1338 0.4327 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTNTSVCLIPNLLLFAAQFVQSALHEIDVLSTIAEGDPSNSKYVVQLIDHFKHTGPNGQHLCMVLEFLGDNLLRLIRYNRYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLLSTIDLAKDPFRSGLSPILERPEGNTNGGFSSLIEKKLKRRARMAVAKISGRRDSMGGTGEAAKSGRNVDGIDVRCKIVDFGNACWANKQFAEEIQTRQYRAPEVILKAGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKIPRKIAIAGAQSKDFFDRHGDLKRIRRLKFWPLDKLLIERYKFSVSDAHEFSEFLLPLFDFAPEKRPTAQQWLQHPWLNCKESTPNEMRNESTVEKVNVGMSNLQIKVGK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00024 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4511g00024 445 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 236 425 - -
Gabi4511g00024 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Gabi4511g00024 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4511g00024 445 SUPERFAMILY Protein kinase-like (PK-like) 32 415 IPR011009 -
Gabi4511g00024 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4511g00024 445 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4511g00024 445 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Gabi4511g00024 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Gabi4511g00024 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00024 Gabi-Chr4511 211892 216566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00024 4 414 EF-hand Containing Proteins AT5G22840 48.812 1.58e-159 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gabi4511g00024 Pkinase 6.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00024 K08832 - gmx:100784192 765.763