Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00019 ATGTCGAGACACACTGTGGCAATAATTGGCCCTCATACCTCTGTAACAGCTCACGTGATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCAACCCTTTCTTCACTTCAGTTCCCATTCTTTGTTAGAACTTGTCACAGTGATCTTTATCAAATGACTGCAGTAGCAGACCTCGTGAACTATTATAGTTGGAAAGATGTTATTGCTGTTTATATTGATGATGATAATGGGAGGAATGGAATAGTGGCATTAGGGGATAAGCTTGCAGAGAGACGTTGCAGGATCTCATATAAAGCACCTTTGAGCCCTAATGCAACTCAGGAGGAGATTACTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCAAGGGTTATAGTTGTTCATGCCAATACTGAAGGGGGTCCCAAGGTGTTTAGTGTTGCAAAGTTTCTTGGGATGATGGAAAATGGTTATGTGTGGATAGCCACTGGTTTTCTATCTGCTTTGCTTGATATGAATAGTCCTCGCCCTTTAGATTTTATGGATGATATTCAAGGAGTTATAACACTACGTGTGTACACGCCAGATTCTGAGCTCAAAAGAAGGTTTGTTTCTAGATGGAAAAACTTGACTAGTGGAGAGACTGCTAATGGCCCCCTTGGATTGAGCTTTTTACCTCTCTTTGCATATGATACTGTTTATTTGCTTGCTCATGCACTTGATGCATTTTTCAAACATGGGAACACAATTTCGTTCTCAAATGATTCAAAGTTATCTGCACTTCGTGGAGACACCTTGCATCTTGATTCTTTGAACGTCTTTAATGAAGGAAATTTGTTACGTAGAAGCATTTATGAGGTTAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCTAATAGAGACCTTGTGAACCCTGCATATGATATCATCAATGTGATTGGAACTGGGTCTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAGCTCTTTATTCCAAACCAGCCAATCATTCTAAGATAAGTCAAAAGGTGTTCCCTGTGATTTGGCCTGGAGACACAGACCAGAAGCCTCGTGGTTGGGTTTTTCCAAACAATGCAAGGCTCTTAAAAATTGGAGTACCAATAAGTGTTAGTTACCATGAATTTGTCTCACATGTACAAGGCACTGCTGATTCATTTGAGGGATTCTGCATTGATGTATTTCTTTCTGCTTTGAACTTGTTGCCTTATGCTGTCCCCTATAAGTTTGTCCCATACGGGGATGGTCGTAACAATCCTAGTTTGACTGAGCTTGTCCGTCTCATCACAACGGGTGAATTTGATGGTGCTGTAGGTGACATTGCAATTACTACAGAAAGAACAAGAATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCAGTTAAGAAGGCAGAATCCAGTGCTTTGGCCTTTTTGTCTCCATTTACGCCAACTTTGTGGTTTGTCACAGCTGTCTCTTTCATAGTAGTCGGAGCTGTTATTTGGATTTTGGAGCATAGGGTGAATGATGATTTTAGAGGTCCACCCAAAAGACAACTAGTTACTATTTTATGGTTTAGTTTTTCAACTATGTTCTTTTCCCACAAGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGATTATATGGTTATTTGTAGTTCTTATAATTACCTCAAGTTACACAGCAAGCCTAACCTCAATCCTCACAGTGCAACAGCTTTCTTCACCCATCAAAGGCATTGAAAGTTTAGTAAATAGTAAAGATCCTATTGGGTACACACAGGCTTCTTTTGTTAGAAATTATTTAGTTCAGGAACTTGGCATTGATGAGTCCAGGCTTGTTCCACTGAAAACACCAGAAGAATCTGCTAAAGCACTGAAAAAGGGTCCCCAAGATGGTGGTGTTGCTGCTTACGTTGATGAACGTGCCTACATGGATCTCTTCCTATCAAGCCGGTGTGATTTTACTATTGTAGGTCAAGAGTTCACCAGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCAGTTGACCTGTCAACAGCCATTTTGGAAATGGCAGAGAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGTTTGTCACAAGGTGCAAAGCTTGAAGTGGAAAGACTAGAACTTAGAAGTTTTTGGGGGCTCTATGTAATCTGTGGGTGTGCCTGTTTGCTTGCTCTCTTCATATATATTATACAGATAATAAGGCAGTACATCAAGCACTATTCAGACGAGCTTGAGTCTCCAGAAGGATCAGGATCTGGATCTTCACATCTACGGACTTTCCTTTCATTTGTTGATGAAAAAGAAGAGACCGTTAAGAACCGTTCCAAGAGAAGGAAAATGGAGAGGATGTCCTACAGAAGCAGTGAGGGAGGATCTTCCATCAACTACAATAAAGGATATGCTTAG 2502 0.4101 MSRHTVAIIGPHTSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFVRTCHSDLYQMTAVADLVNYYSWKDVIAVYIDDDNGRNGIVALGDKLAERRCRISYKAPLSPNATQEEITNVLVQVALAESRVIVVHANTEGGPKVFSVAKFLGMMENGYVWIATGFLSALLDMNSPRPLDFMDDIQGVITLRVYTPDSELKRRFVSRWKNLTSGETANGPLGLSFLPLFAYDTVYLLAHALDAFFKHGNTISFSNDSKLSALRGDTLHLDSLNVFNEGNLLRRSIYEVNMTGVSGPFKYTSNRDLVNPAYDIINVIGTGSRRIGYWSNYSGLSVVPPEALYSKPANHSKISQKVFPVIWPGDTDQKPRGWVFPNNARLLKIGVPISVSYHEFVSHVQGTADSFEGFCIDVFLSALNLLPYAVPYKFVPYGDGRNNPSLTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVKKAESSALAFLSPFTPTLWFVTAVSFIVVGAVIWILEHRVNDDFRGPPKRQLVTILWFSFSTMFFSHKENTVSTLGRFVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVNSKDPIGYTQASFVRNYLVQELGIDESRLVPLKTPEESAKALKKGPQDGGVAAYVDERAYMDLFLSSRCDFTIVGQEFTRNGWGFAFPRDSPLAVDLSTAILEMAENGDLQRIHDKWLLSSACLSQGAKLEVERLELRSFWGLYVICGCACLLALFIYIIQIIRQYIKHYSDELESPEGSGSGSSHLRTFLSFVDEKEETVKNRSKRRKMERMSYRSSEGGSSINYNKGYA 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00019 833 Gene3D - 666 727 - -
Gabi4511g00019 833 SUPERFAMILY Periplasmic binding protein-like II 356 722 - -
Gabi4511g00019 833 Gene3D - 491 621 - -
Gabi4511g00019 833 FunFam Glutamate receptor 374 491 - -
Gabi4511g00019 833 FunFam Glutamate receptor 617 724 - -
Gabi4511g00019 833 MobiDBLite consensus disorder prediction 803 833 - -
Gabi4511g00019 833 Gene3D - 374 490 - -
Gabi4511g00019 833 FunFam Glutamate receptor 491 621 - -
Gabi4511g00019 833 Pfam Receptor family ligand binding region 2 317 IPR001828 -
Gabi4511g00019 833 Pfam Bacterial extracellular solute-binding proteins, family 3 422 720 IPR001638 -
Gabi4511g00019 833 FunFam Glutamate receptor 55 211 - -
Gabi4511g00019 833 Pfam Ligand-gated ion channel 721 753 IPR001320 GO:0015276|GO:0016020
Gabi4511g00019 833 SMART GluR_14 380 722 IPR001320 GO:0015276|GO:0016020
Gabi4511g00019 833 CDD GluR_Plant 379 720 - -
Gabi4511g00019 833 PIRSF IGluLR_plant 1 830 IPR017103 -
Gabi4511g00019 833 Gene3D - 55 332 - -
Gabi4511g00019 833 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 799 IPR015683 -
Gabi4511g00019 833 SUPERFAMILY Periplasmic binding protein-like I 2 371 IPR028082 -
Gabi4511g00019 833 Gene3D - 1 307 - -
Gabi4511g00019 833 MobiDBLite consensus disorder prediction 818 833 - -
Gabi4511g00019 833 PRINTS Metabotropic glutamate GPCR signature 75 92 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00019 833 PRINTS Metabotropic glutamate GPCR signature 8 34 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00019 833 PRINTS Metabotropic glutamate GPCR signature 59 75 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00019 833 PRINTS Metabotropic glutamate GPCR signature 482 504 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00019 833 PRINTS Metabotropic glutamate GPCR signature 40 59 IPR000337 GO:0004930|GO:0007186|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00019 Gabi-Chr4511 170733 174971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00019 1 820 Ion Channels AT3G51480 60.219 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00019 K05387 - gmx:100793320 1356.66