Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00018 ATGATTAAAGTTTGGTTCTTGGCGTTGATGGTTCTCTCCAATGGGTTTTCTTCAACTGGGGCTGGCATTCAGAATTCCACAATACCTGATTTTGTAAATATTGGAGCTCTCTTCTCTTTCAATACCAGTGTTGGTAGATGTATACGAATTGCTATAGAAGCTGCTGTTGAAGATGTGAATTCGGATCCAAATATTCTTGGTAAAACTAAGCTGAAGGTCTCACCTCAAGAAGATTCTAAATATAGAGGTTTTCTGAGCATTTCTGAGGTTTTGCAGGTTATGTCGAGACACACTGTGGCAATAATTGGCCCTCATACCTCTGTAACAGCTCACGTGATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCAACCCTTTCTTCACTTCAGTTCCCATTCTTTGTTAGAACTTGTCACAGTGATCTTTATCAAATGACTGCAGTAGCAGACCTCGTGAACTATTATAGTTGGAAAGATGTTATTGCTGTTTATATTGATGATGATAATGGGAGGAATGGAATAGTGGCATTAGGGGATAAGCTTGCAGAGAGACGTTGCAGGATCTCATATAAAGCACCTTTGAGCCCTAATGCAACTCAGGAGGAGATTACTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCAAGGGTTATAGTTGTTCATGCCAATACTGAAGGGGGTCCCAAGGTGTTTAGTGTTGCAAAGTTTCTTGGGATGATGGAAAATGGTTATGTGTGGATAGCCACTGGTTTTCTATCTGCTTTGCTTGATATGAATAGTCCTCGCCCTTTAGATTTTATGGATGATATTCAAGGAGTTATAACACTACGTGTGTACACGCCAGATTCTGAGCTCAAAAGAAGGTTTGTTTCTAGATGGAAAAACTTGACTAGTGGAGAGACTGCTAATGGCCCCCTTGGATTGAGCTTTTTACCTCTCTTTGCATATGATACTGTTTATTTGCTTGCTCATGCACTTGATGCATTTTTCAAACATGGGAACACAATTTCGTTCTCAAATGATTCAAAGTTATCTGCACTTCGTGGAGACACCTTGCATCTTGATTCTTTGAACGTCTTTAATGAAGGAAATTTGTTACGTAGAAGCATTTATGAGGTTAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCTAATAGAGACCTTGTGAACCCTGCATATGATATCATCAATGTGATTGGAACTGGGTCTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAGCTCTTTATTCCAAACCAGCCAATCATTCTAAGATAAGTCAAAAGGTGTTCCCTGTGATTTGGCCTGGAGACACAGACCAGAAGCCTCGTGGTTGGGTTTTTCCAAACAATGCAAGGCTCTTAAAAATTGGAGTACCAATAAGTGTTAGTTACCATGAATTTGTCTCACATGTACAAGGCACTGCTGATTCATTTGAGGGATTCTGCATTGATGTATTTCTTTCTGCTTTGAACTTGTTGCCTTATGCTGTCCCCTATAAGTTTGTCCCATACGGGGATGGTCGTAACAATCCTAGTTTGACTGAGCTTGTCCGTCTCATCACAACGGGTGAATTTGATGGTGCTGTAGGTGACATTGCAATTACTACAGAAAGAACAAGAATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCAGTTAAGAAGGCAGAATCCAGTGCTTTGGCCTTTTTGTCTCCATTTACGCCAACTTTGTGGTTTGTCACAGCTGTCTCTTTCATAGTAGTCGGAGCTGTTATTTGGATTTTGGAGCATAGGGTGAATGATGATTTTAGAGGTCCACCCAAAAGACAACTAGTTACTATTTTATGGTTTAGTTTTTCAACTATGTTCTTTTCCCACAAGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGATTATATGGTTATTTGTAGTTCTTATAATTACCTCAAGTTACACAGCAAGCCTAACCTCAATCCTCACAGTGCAACAGCTTTCTTCACCCATCAAAGGCATTGAAAGTTTAGTAAATAGTAAAGATCCTATTGGGTACACACAGGCTTCTTTTGTTAGAAATTATTTAGTTCAGGAACTTGGCATTGATGAGTCCAGGCTTGTTCCACTGAAAACACCAGAAGAATCTGCTAAAGCACTGAAAAAGGGTCCCCAAGATGGTGGTGTTGCTGCTTACGTTGATGAACGTGCCTACATGGATCTCTTCCTATCAAGCCGGTGTGATTTTACTATTGTAGGTCAAGAGTTCACCAGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCGCCATTAGCAGTTGACCTGTCAACAGCCATTTTGGAAATGGCAGAGAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGTTTGTCACAAGGTGCAAAGCTTGAAGTGGAAAGACTAGAACTTAGAAGTTTTTGGGGGCTCTATGTAATCTGTGGGTGTGCCTGTTTGCTTGCTCTCTTCATATATATTATACAGATAATAAGGCAGTACATCAAGCACTATTCAGACGAGCTTGAGTCTCCAGAAGGATCAGGATCTGGATCTTCACATCTACGGACTTTCCTTTCATTTGTTGATGAAAAAGAAGAGACCGTTAAGAACCGTTCCAAGAGAAGGAAAATGGAGAGGATGTCCTACAGAAGCAGTGAGGGAGGATCTTCCATCAACTACAATAAAGGATATGCTTAG 2781 0.4074 MIKVWFLALMVLSNGFSSTGAGIQNSTIPDFVNIGALFSFNTSVGRCIRIAIEAAVEDVNSDPNILGKTKLKVSPQEDSKYRGFLSISEVLQVMSRHTVAIIGPHTSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFVRTCHSDLYQMTAVADLVNYYSWKDVIAVYIDDDNGRNGIVALGDKLAERRCRISYKAPLSPNATQEEITNVLVQVALAESRVIVVHANTEGGPKVFSVAKFLGMMENGYVWIATGFLSALLDMNSPRPLDFMDDIQGVITLRVYTPDSELKRRFVSRWKNLTSGETANGPLGLSFLPLFAYDTVYLLAHALDAFFKHGNTISFSNDSKLSALRGDTLHLDSLNVFNEGNLLRRSIYEVNMTGVSGPFKYTSNRDLVNPAYDIINVIGTGSRRIGYWSNYSGLSVVPPEALYSKPANHSKISQKVFPVIWPGDTDQKPRGWVFPNNARLLKIGVPISVSYHEFVSHVQGTADSFEGFCIDVFLSALNLLPYAVPYKFVPYGDGRNNPSLTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVKKAESSALAFLSPFTPTLWFVTAVSFIVVGAVIWILEHRVNDDFRGPPKRQLVTILWFSFSTMFFSHKENTVSTLGRFVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVNSKDPIGYTQASFVRNYLVQELGIDESRLVPLKTPEESAKALKKGPQDGGVAAYVDERAYMDLFLSSRCDFTIVGQEFTRNGWGFAFPRDSPLAVDLSTAILEMAENGDLQRIHDKWLLSSACLSQGAKLEVERLELRSFWGLYVICGCACLLALFIYIIQIIRQYIKHYSDELESPEGSGSGSSHLRTFLSFVDEKEETVKNRSKRRKMERMSYRSSEGGSSINYNKGYA 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00018 926 Gene3D - 732 782 - -
Gabi4511g00018 926 MobiDBLite consensus disorder prediction 896 926 - -
Gabi4511g00018 926 Gene3D - 584 713 - -
Gabi4511g00018 926 SMART GluR_14 473 815 IPR001320 GO:0015276|GO:0016020
Gabi4511g00018 926 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Gabi4511g00018 926 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Gabi4511g00018 926 Gene3D - 783 813 - -
Gabi4511g00018 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 892 IPR015683 -
Gabi4511g00018 926 Pfam Bacterial extracellular solute-binding proteins, family 3 516 813 IPR001638 -
Gabi4511g00018 926 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Gabi4511g00018 926 Pfam Receptor family ligand binding region 51 410 IPR001828 -
Gabi4511g00018 926 Gene3D - 50 400 - -
Gabi4511g00018 926 PIRSF IGluLR_plant 1 923 IPR017103 -
Gabi4511g00018 926 FunFam Glutamate receptor 710 817 - -
Gabi4511g00018 926 Gene3D - 148 425 - -
Gabi4511g00018 926 PRINTS Metabotropic glutamate GPCR signature 575 597 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00018 926 PRINTS Metabotropic glutamate GPCR signature 101 127 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00018 926 PRINTS Metabotropic glutamate GPCR signature 168 185 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00018 926 PRINTS Metabotropic glutamate GPCR signature 133 152 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00018 926 PRINTS Metabotropic glutamate GPCR signature 152 168 IPR000337 GO:0004930|GO:0007186|GO:0016020
Gabi4511g00018 926 MobiDBLite consensus disorder prediction 911 926 - -
Gabi4511g00018 926 FunFam Glutamate receptor 467 584 - -
Gabi4511g00018 926 FunFam Glutamate receptor 148 304 - -
Gabi4511g00018 926 SUPERFAMILY Periplasmic binding protein-like II 449 815 - -
Gabi4511g00018 926 FunFam Glutamate receptor 584 714 - -
Gabi4511g00018 926 CDD GluR_Plant 472 813 - -
Gabi4511g00018 926 Gene3D - 467 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00018 Gabi-Chr4511 170732 175701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00018 5 913 Ion Channels AT3G51480 58.617 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00018 K05387 - gmx:100793320 1505.73