Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00017 ATGAGATTTCGCGTTTCAAACGCTCTGCGATCACTCATTGTGGTTTTCTTCATATTGAGCTTCATCGTTGCTGATGCATACACCTCACAATCCCAACAACTATCGCTTCTCAATAATGGATTCTCTTCTTCATCTCTTCTCTCTCTTCCACCTTCAGTTCCGAATTCCTTGGTCAGAAAACCAGCTACTGCACTCATCGCTGCCCTAGATGGAACTATTTATTTGGTTGAAAGTTCTTCTGGAAGGGTCATTTGGTCATTTCCAACTGGATCCCCAATCTACCATTCATATCAAGCACCAATCCTCAACAACAACAACCCTAATAACAATTCATCTGGACCTATTAGCGGTCTCATCGAATGCGGTGATGACTGGGAATTAATTGTGCATGACTCGCACTTTGGTAAAACGCCACTCCAACAATCTATTGCAGATTATGTTGCTTTTACACCTACCATGACAACAGATGGTGCAGTTATAGTTGGATCCAAAATAAGCACTATGTTTGAAGTAGATGCTAAAACTGGAAGACTCGTTCGAAGCTATCCTGCTGCTGATGTTGATAATACTTTAACTGTAGTGTGGAGTGATGACGGGCAGAGTGTTACTAATGTCCTCAGTACAAAGAGTAATGTGCTTGCTGATCCTGCAAAGCTAAATACTCCTGAATTTATAATCAAGATAGTCAGGACAGATTACTTTTTAAAATCTGTCGGTCCCAAATCAGGAATGGTTTTGTGGACTATGGCTGTGGCTGAATTTAAGGCTGTATTACTTTGCCAACATAATGAAAATCCATCTGGCAGTGCTTCATTTGATGCAGAGGATGAGTATGCTTTTGACAGTGGCTTCGATTTTGCTATGCCATATGCATGTCGAGACAGAAAACTAAAAGAAGTCTATCGCCAACGAAAGAATTTTCTGTTTGAACCTGCTAACCTGGAAAGATGGGATAATCGAGACCGAATGCGTACTTCAGATCTGATGCTTCCATCACAGCCTAATATTGATAGATTTGTCCCTGGTCATGATGGTAATATTAATCATAAGATGCTTCCTGTGCTCTCTTTGCAGCCAAAAATTGGCTTTTATGACTCTAACGATAGAGCAGTTGTGCTCCATCAGCCTCATATGAAGATCACTTCACCAGGGAAAGTTGATCCAAATAGGGTTCAAAAAATCAGCTATGACCCCAACGATAGTGCAGCTGTGCTTCATCTTCCTAGTATGGAGATCACTTCACCAGGGAAAGTTGGTCCAAACAGGGTGATTGATTGGTCGACAGCACTACTTGTTTTATTGTTTATGGTCTTTTTCTTTGGGTTTTTTATCTTGTACCAGCCTCTAGTGGTTAAAATTCAACTTATATTGAAGGACCAAAACAGTGAGCCAGATTTAAAAAGTTTACCTCCTAAAAAAAAGAGAGCACGTAAGTCAGGAAAGAACAACATCATTGTTGACAAACAGGATAAGCATCTATCATCAGCTGAGGAGGATATACTTACACATAAGGAAACTAACAGTGAAGCATGGTTGCACTTTAATAAAGTTGATGGACGAAGGATCGGTAAACTATTTGTATCCAATAAAGAAATCGCTAAGGGAAGCAATGGTACCATTGTCCTCGAAGGGCTATATGAAGGGCGGGCAGTTGCTGTCAAACGTCTTGTCCAGACTCATCATGATGTAGCCCATAAAGAAATCCAAAATCTCATTGCTTCTGACTGTCATCCAAATATTGTCAGATGGTATGGGGTGGAATATGATCACGATTTTGTGTACCTTGCTCTGGAGCGTTGTTCATGCAATTTGGATGATTTGATTCATATTTACTCTGATATATCAGAAAACCCAGTGTTTGGCAAGGACCAAGCTTCTAATTTCTTTATAAAGGCTCAGATGGAGACAGGGAGGGATGATATGCAATATCTTTGGAAAGCAAATGGCTATCCATCACCTCTATTACTGAAAATGATGAGGGATGTAGTTTCTGGTCTTGTTCATTTGCATGAACTAGGAATAATCCATCGGGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAGATCATTATGTGCAAAGCTTTCTGATATGGGGATTAGCAAACGCCTTCTTGGAGATATGTCTTCTTTGGATCATAGTGCTACTGGCTGTGGCAGTTCAGGTTGGCAAGCACCAGAGCAGCTTGTTCAAGGACGCCAAACAAGGGCAGTAGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGCAGGAAGACATCCATTTGGAGAACGTCTTGAGCGTGATTTCAATATTGTGAAAAATCAAAAGGATCTTTTCTTAGTGGAGTTCATTCCTGAAGCTGAGGATCTTATTTCTTGTTTATTAAACCCTGACCCTGATCTAAGGCCAAAGGCAATTGAAGTATTGCATCATCCTCTTTTTTGGAGTTCTGACAAGAGGCTTTCATTTCTCCGCGACACCAGTGATAGGGTGGAACTTGAAGATAGAGAGACTAATTCTGATCTATTGAAGGCATTAGAAAGCATTGCTCCTGTGGCTTTAGGTTCAAAATGGGATGAAAAGATGGAACAAGCTTTCATTACTAACATTGGTCATTACAGGCGGTATAAATTTGACAGTGTTCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTATAGAGAATTGCCTCAGGAAATCCAGGAACTAGTAGGACCTGTTCCAGAAGGATTCAATGACTACTTTGCAAGTCGCTTCCCCAGGCTCTTGATTGAAGTATACAAAGTTATATGCATATATTGCAAGGACGATGAATGTTTTCAAAGGTATTTCAGAGACAATGACTAG 2847 0.4018 MRFRVSNALRSLIVVFFILSFIVADAYTSQSQQLSLLNNGFSSSSLLSLPPSVPNSLVRKPATALIAALDGTIYLVESSSGRVIWSFPTGSPIYHSYQAPILNNNNPNNNSSGPISGLIECGDDWELIVHDSHFGKTPLQQSIADYVAFTPTMTTDGAVIVGSKISTMFEVDAKTGRLVRSYPAADVDNTLTVVWSDDGQSVTNVLSTKSNVLADPAKLNTPEFIIKIVRTDYFLKSVGPKSGMVLWTMAVAEFKAVLLCQHNENPSGSASFDAEDEYAFDSGFDFAMPYACRDRKLKEVYRQRKNFLFEPANLERWDNRDRMRTSDLMLPSQPNIDRFVPGHDGNINHKMLPVLSLQPKIGFYDSNDRAVVLHQPHMKITSPGKVDPNRVQKISYDPNDSAAVLHLPSMEITSPGKVGPNRVIDWSTALLVLLFMVFFFGFFILYQPLVVKIQLILKDQNSEPDLKSLPPKKKRARKSGKNNIIVDKQDKHLSSAEEDILTHKETNSEAWLHFNKVDGRRIGKLFVSNKEIAKGSNGTIVLEGLYEGRAVAVKRLVQTHHDVAHKEIQNLIASDCHPNIVRWYGVEYDHDFVYLALERCSCNLDDLIHIYSDISENPVFGKDQASNFFIKAQMETGRDDMQYLWKANGYPSPLLLKMMRDVVSGLVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLGDMSSLDHSATGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDFNIVKNQKDLFLVEFIPEAEDLISCLLNPDPDLRPKAIEVLHHPLFWSSDKRLSFLRDTSDRVELEDRETNSDLLKALESIAPVALGSKWDEKMEQAFITNIGHYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPRLLIEVYKVICIYCKDDECFQRYFRDND 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00017 948 SUPERFAMILY Protein kinase-like (PK-like) 511 829 IPR011009 -
Gabi4511g00017 948 CDD RNase_Ire1 817 944 - -
Gabi4511g00017 948 Pfam Ribonuclease 2-5A 818 944 IPR010513 GO:0004540|GO:0006397
Gabi4511g00017 948 SMART serkin_6 526 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4511g00017 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 674 686 IPR008271 GO:0004672|GO:0006468
Gabi4511g00017 948 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 816 948 - -
Gabi4511g00017 948 Pfam Protein kinase domain 528 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4511g00017 948 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 637 814 - -
Gabi4511g00017 948 ProSiteProfiles KEN domain profile. 815 946 IPR010513 GO:0004540|GO:0006397
Gabi4511g00017 948 Gene3D KEN domain 815 948 IPR038357 -
Gabi4511g00017 948 PANTHER IRE1-RELATED 141 947 IPR045133 GO:0004521|GO:0004674|GO:0030968
Gabi4511g00017 948 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 518 598 - -
Gabi4511g00017 948 Gene3D Transferase(Phosphotransferase) domain 1 642 814 - -
Gabi4511g00017 948 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 66 238 IPR011047 -
Gabi4511g00017 948 Gene3D - 43 267 IPR015943 GO:0005515
Gabi4511g00017 948 Gene3D Phosphorylase Kinase; domain 1 514 598 - -
Gabi4511g00017 948 SMART PGNneu 877 931 - -
Gabi4511g00017 948 SMART ire1_9 57 88 IPR018391 -
Gabi4511g00017 948 SMART ire1_9 151 183 IPR018391 -
Gabi4511g00017 948 ProSiteProfiles Protein kinase domain profile. 526 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00017 Gabi-Chr4511 164180 170570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00017 552 811 MAP Kinase Kinase Kinase AT3G06030 26.136 1.34e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Gabi4511g00017 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00017 K08852 - gmx:100785363 1190.25